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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGACTCAGGAGAAAGCACTGAGGAAGAGGTGCTTTGGTGATGGAGTTACTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcatttaactctcttgtaaatttgtcgttttctttttattgaatttgttatttcacaattgtgttccacaggcacaatgcacttattcaagattat...

Basic information

species Oryza sativa
transcript LOC_Os01g44220.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88371876|gb|CI681387.1|CI681387
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88851990|gb|CI679548.1|CI679548
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88306534|gb|CI671286.1|CI671286
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88461692|gb|CI695535.1|CI695535
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88587225|gb|CI704961.1|CI704961
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88959416|gb|CI685897.1|CI685897
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88580407|gb|CI697335.1|CI697335
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88731649|gb|CI755262.1|CI755262
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88722340|gb|CI745850.1|CI745850
EST:     TGGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: T-GGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88468807|gb|CI696804.1|CI696804
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCTTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88463678|gb|CI696154.1|CI696154
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88321573|gb|CI672705.1|CI672705
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88730612|gb|CI754225.1|CI754225
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88722803|gb|CI746313.1|CI746313
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88424033|gb|CI689732.1|CI689732
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88591296|gb|CI708221.1|CI708221
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCTTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|1632029|gb|C19758.1|C19758
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88359940|gb|CI679709.1|CI679709
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCANGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88586455|gb|CI704156.1|CI704156
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88959057|gb|CI685793.1|CI685793
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88361961|gb|CI682139.1|CI682139
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88404910|gb|CI685344.1|CI685344
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88587570|gb|CI705326.1|CI705326
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATACAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88722100|gb|CI745427.1|CI745427
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88586431|gb|CI704132.1|CI704132
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACCATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88728671|gb|CI752181.1|CI752181
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88578726|gb|CI687673.1|CI687673
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88379094|gb|CI681927.1|CI681927
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88582923|gb|CI699388.1|CI699388
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|95101434|gb|CI693182.1|CI693182
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88721785|gb|CI745084.1|CI745084
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88724785|gb|CI748044.1|CI748044
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88851762|gb|CI674964.1|CI674964
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88581614|gb|CI698814.1|CI698814
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88334475|gb|CI676249.1|CI676249
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCTTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88590335|gb|CI709181.1|CI709181
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88388472|gb|CI683249.1|CI683249
EST:     CTGGAACTGCACGATGTGTGTTCACATCACATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88321531|gb|CI672660.1|CI672660
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88726224|gb|CI749879.1|CI749879
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|95101252|gb|CI692993.1|CI692993
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88576805|gb|CI673331.1|CI673331
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88578267|gb|CI687187.1|CI687187
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88731555|gb|CI755168.1|CI755168
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88369747|gb|CI680418.1|CI680418
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88721115|gb|CI744414.1|CI744414
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|1631746|gb|C19475.1|C19475
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88369721|gb|CI680389.1|CI680389
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88587485|gb|CI705235.1|CI705235
EST:     CTGGAACTGCACGATGTGTGTTCACATCACATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88414466|gb|CI691632.1|CI691632
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88727392|gb|CI751047.1|CI751047
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88695102|gb|CI739140.1|CI739140
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88467402|gb|CI696785.1|CI696785
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88394230|gb|CI684905.1|CI684905
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88583741|gb|CI701244.1|CI701244
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|88722816|gb|CI746326.1|CI746326
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
EST: gi|66922783|gb|CX109631.1|CX109631
EST:     CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCT                         CATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT
genomic: CTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcattt ... aaatttacagCATCTTCGGACACAATCCTCCCGAAAGAATTATGCTGATGCAAGCCACGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATGACTCAGGAGAAAGCACTGAGGAAGAGGTGCTTTGGTGATGGAGTTACTGGAACTGCACGATGTGTGTTCACATCAGATGCTGATAGAGACACTCCTgtaagcatttaactctcttgtaaatttgtcgttttctttttattgaatttgttatttcacaattgtgttccacaggcacaatgcacttattcaagattat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT