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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCATGCACCCAGAGTGGCAAGACCGTGCAAGGGAAGAGATCCTTGGACTATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATCgtgagtatattgtagaattcgacaataccacttcgttctcatgagatgacttaaacaatttgcagctagaagtagtactaaaactcacttatatgtgcattgtgtag

Basic information

species Oryza sativa
transcript LOC_Os01g43750.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86422277|gb|CI059850.1|CI059850
EST:     GGCCTGAGCCGCCTGAAAATC                         GTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
genomic: GGCCTGAGCCGCCTGAAAATCgtgagtatat ... cattgtgtagGTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
EST: gi|86497365|gb|CI139998.1|CI139998
EST:     TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATC                         GTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
genomic: TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATCgtgagtatat ... cattgtgtagGTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
EST: gi|14982074|gb|BI306752.1|BI306752
EST:     AAACAAATCTGAATACGAAGGCCTGAGCCGCCTGAAAATC                         GTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
genomic: AAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATCgtgagtatat ... cattgtgtagGTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
EST: gi|86499571|gb|CI142204.1|CI142204
EST:     TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATC                         GTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
genomic: TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATCgtgagtatat ... cattgtgtagGTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
EST: gi|88228751|gb|CI228231.1|CI228231
EST:     TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATC                         GTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
genomic: TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATCgtgagtatat ... cattgtgtagGTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
EST: gi|29614912|gb|CB619925.1|CB619925
EST:     TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATC                         GTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
genomic: TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATCgtgagtatat ... cattgtgtagGTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC