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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTTGAATGGATCTTGGAAACTTGGTGGGTTTGGTTTTGCTCTTTCTGTTGACCAAGCCACAGGCAGTTTGACATCAACACAGCAATTCCACTATTCGgttagtaagtaatttatgcttagttgtgcattatgtgatagcttttaagctgtgtatttgttttaccattttggatacactaactaattggagcaatagc...

Basic information

species Oryza sativa
transcript LOC_Os01g42950.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g42950.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 3
AACTTTGAATGGATCTTGGAAACTTGGTGGGTTTGGTTTTGCTCTTTCTGTTGACCAAGCCACAGGCAGTTTGACATCAACACAGCAATTCCACTATTCGgttagtaagtaatttatgcttagttgtgcattatgtgatagcttttaagctgtgtatttgttttaccat--tttggatacactaactaattggagcaatagc--
|||||  || ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||  ||||||| ||| |||||| |||||| ||||||||||||||||| | ||   ||||||   |||| ||   | ||||| ||  ||   |||  |||||||||  ||||   ||| | ||||||  |     |  |  
AACTTCTAACGGATCTTGGAAGCTTGGTGGGTTTGGTTTTGCTCTTTCAGTTGATCAAGCCACAGGTGGTTTGACTTCATCACAGCTATTCCATTATTCGgttagtaagtattctacatttagtttgtcattttg--gtggcttt-aatttgcagattc-ttttaccatattttgagaacattgactaatctgtattgtccctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58653744|gb|CK042424.1|CK042424
EST:     TTGACCAAGCCACAGGCAGTTTGACATCAACACAGCAATTCCACTATTCG                         GACTATGATGTTGAGGATACAGCTTTACCTCTTCAACCATCTCTGAATTAT
genomic: TTGACCAAGCCACAGGCAGTTTGACATCAACACAGCAATTCCACTATTCGgttagtaagt ... ccctctaaagGACTATGATGTTGAGGATACAGCTTTACCTCTTCAACCATCTCTGAATTAT