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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGATGCAATGTTCTGCCTGAATGTCAACAGACTTGAGCAAGAAGATGCCATTCTTCCGCAGGATCTGCTTCAGGACAAGGTCGTCGCCTTCAACAAGgtattgcactctgatggccatatctttgaaacgatccagatcctcgggcacctctagaagtcgctctgctcctggtgatgagacctgaaatgagcaaatcggttctcagtaagttgctctgaaatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g41160.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g41160.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G025977_T01 (Zea mays), 5'ss of exon 4
-----------------TCCTGATGCAAT-GTTCTGCCTGAATGTCAACAGACTTGAGCAAGAAGATGCCATTCTTCCGCAGGATCTGCTTCAGGACAAGGTCGTCGCCTTCAACAAGgtattgcactctgatggccatatctttgaaacgatccagatcctcgggcacctctagaagtcgctctgctcctggtgatgagacctgaaatgagcaaatcggttctcagtaagttgctctgaaatgcag
                 ||| ||  || | | || |||||| ||| ||| |||| ||||||||||||||||| |||| ||| | |||||||| | | |||||| | || | |    |  | || ||   |  |    ||  ||  ||||   |   | || | |   || | | |   |||||       | |  |||   | |||                                         
GGTGACATCTACCAGCTTCCAGACACAGTAGCTCAGCCTGAGTGTTAACGGACTCGAGCAAGAAGATGCCATCCTTCAGCAAGTTCTGCTTCGGCATAAGgtcat-gcatgctttca--tgttacatctt--tcaatatgcctacgaaatatttttggtc-tggtatactttt-gtcctcgctgccaatttcgccatgtcccatgag----------------------------------------