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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCCACGTCTTCTACAATCAGTCTTTGCATCTTTTGGGGATCTCTACTTATATAAACTTTCAAAACTCATTTTCAATAATCACGTTGCCCAGTGGGCAgtatccttgaactcatttatgtagatatgatgttcctttttcgtaaataaacaagtccattttcctggtgaatggtgaccttaacaagtcatttccag

Basic information

species Oryza sativa
transcript LOC_Os01g39810.2
intron # 3
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g39810.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G000937_T01 (Zea mays), 5'ss of exon 4
GGCTCCACGTCTTCTACAATCAGTCTTTGCATCTTTTGGGGATCTCTACTTATATAAACTTTCAAAACTCATTTTCAATAATCACGTTGCCCAGTGGGCAgtatccttgaactcatttatgtagatatgatgttcctttttcgtaaataaacaagtccattttcctggtgaatggtgaccttaacaagtcatttccag
||||||||||||  | |||||  | |||||| ||||||| ||||| ||| ||||||||||||| ||||| |||||||||  ||| |||||  ||||| | |||||||| ||||||||||||||  |||    ||  || ||||| | || |  | | ||    |||  || |||  | |||||||||    ||| |||
GGCTCCACGTCTCGTGCAATCTTTGTTTGCAGCTTTTGGAGATCTATACCTATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGTGGACGgtatccttaaactcatttatgtacctatacaatt--ttcttcgtgagtatatgacttcaacaacct--tggatgtcggccttaacaaactgtttgcag

upper sequence: LOC_Os01g39810.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G164175_T02 (Zea mays), 5'ss of exon 5
GGCTCCACGTCTTCTACAATCAGTCTTTGCATCTTTTGGGGATCTCTACTTATATAAACTTTCAAAACTCATTTTCAATAATCACGTTGCCCAGTGGGCAgtatccttgaactcatttatgtagatatgatgttcctttttcgtaaataaacaagtccattttcctggtgaatggtgaccttaacaagtcatttccag
||||||||||||  | |||||  | |||||| ||||||| ||||| ||| ||||||||||||| ||||| |||||||||  ||| |||||  ||||| | |||||||| ||||||||||||||  |||    ||  || ||||| | || |  | | ||    |||  || | |  | |||||||||    ||| |||
GGCTCCACGTCTCGTGCAATCTTTGTTTGCAGCTTTTGGAGATCTATACCTATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGTGGACGgtatccttaaactcatttatgtacctatacaatt--ttcttcgtgagtatatgacttcaacaacct--tggacgtcggccttaacaaactgtttgcag