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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTGTTAATTGGACCAATATTACCCTTCAAAGCTCGAAGGTGCAGCACAGTGATATTGACAAACTTTCAATATCCAACATACCTGTAGGGTCAAAGAGgttagtaccagataatttttctgtcttaaaatatagtaatatacctacatattactgttaatgttgtgtaccatctttggctaaaatatgggcatgcctg...

Basic information

species Oryza sativa
transcript LOC_Os01g35050.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g35050.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G021194_T01 (Zea mays), 5'ss of exon 3
TGCCTGTTAATTGGACCAATATTACCCTTCAAAGCTCGAAGGTGCAGCACAGTGATATTGACAAACTTTCAATATCCAACATACCTGTAGGGTCAAAGAGgttagtaccagataatttttctgtcttaaaatatagtaatatac-ctacatattactgttaatgttgtgtaccatctttggctaaaatatgggcatgcctg--
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TCCCTGTTAATTGGACCAATGATACTCTGCAATTCTCGAAGTTAGAGCACAGCAATGTTGATAAGCTTTCAATATCAAACATACCAGTTGGATCAAAAAGgttagcact---tgttctttgtttttgcaaccatgattctttgggccattgccttgtatccttttctattgataggttcaggaaagttgtaaaattgatgtaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58609230|gb|CK037263.1|CK037263
EST:     AGTGATATTGACAAACTTTCAATATCCAACATACCTGTAGGGTCAAAGAG                         GTTCGCAGCTCACCTGACCATGGCTTATGTTTTCACATTTTGGACATGCTA
genomic: AGTGATATTGACAAACTTTCAATATCCAACATACCTGTAGGGTCAAAGAGgttagtacca ... tttaatgcagGTTCGCAGCTCACCTGACCATGGCTTATGTTTTCACATTTTGGACATGCTA