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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAGTTCAACACGAGTTGCTGCTGATCCTGATACACATCAAGATTTCCAGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacatttctaaatgagctttttggacatttaaattgaagaacttattttgtggcaaagctaggcatgtcttaaagtttcatgatgtatttctgccatttgttaatgctgcctcataattgttgggcag

Basic information

species Oryza sativa
transcript LOC_Os01g34620.7
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g34620.9 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G880300_T02 (Zea mays), 5'ss of exon 3
CTCAAGTTCAACACGAGTTGCTGCTGATCCTGATACACATCAAGATTTCCAGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacatttctaaatgagctttttggacatttaaatt-------gaagaacttattttgtggcaaagctaggcatgtcttaaagtttcatgatgtatttctgccatttgttaatgctgcctcataattgttgggcag
||||| | |||||||| | |||||||||||||||||||||||||||||| |||| |  | || || |||  ||||| ||||  |||||  | || |||||||||| ||||    | ||||| ||   | | ||||| |||       |||| || ||  |||||  ||| ||||||||  | | ||| ||  |||||||| | |   |  ||  |   || | |   | ||  | || ||
CTCAACTACAACACGAATAGCTGCTGATCCTGATACACATCAAGATTTCGAGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacatgcagagatgagattcaagaatatttatattaaacattgaagcacctaacttgtgataaaactaggcataacctgaagcttattgatgtatcttt-ttagctgccatctcttcttatcattttcttggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218483000|gb|FG956128.1|FG956128
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
EST: gi|218489064|gb|FG948407.1|FG948407
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
EST: gi|218500313|gb|FG954965.1|FG954965
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
EST: gi|58675402|gb|CK064089.1|CK064089
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
EST: gi|38482485|gb|CF966520.1|CF966520
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
EST: gi|218505071|gb|FG947171.1|FG947171
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
EST: gi|38478580|gb|CF962713.1|CF962713
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
EST: gi|33680954|gb|CF309193.1|CF309193
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
EST: gi|58693371|gb|CK082058.1|CK082058
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
EST: gi|86901749|gb|CI310511.1|CI310511
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
EST: gi|88427128|gb|CI586676.1|CI586676
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
EST: gi|33662134|gb|CF293101.1|CF293101
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
EST: gi|33808808|gb|CF330289.1|CF330289
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
EST: gi|38477159|gb|CF961292.1|CF961292
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
EST: gi|88316503|gb|CI622749.1|CI622749
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT