1 5' 3' | 2 5' 3' | 3 5' 3' |
CTTGGATTTTTATGATGAAATGGCTAGCTTCGGTAGCTGATTTAGAATTTTGCAGCGGCAAAATAAAAAGTGATAGCTGAAGGAAAATCTTGGATTCATGgtagtattcatgcacatcaactggcattagacaatctcacattttgcctgcttaatttacacacaatcaaagcttaattctatgttaacatcaggattttgttgtgcctaagtaacacctcttttgctatggatag
species | Oryza sativa |
transcript | LOC_Os01g28989.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCAGCGGCAAAATAAAAAGTGATAGCTGAAGGAAAATCTTGGATTCATG ATGAATCGGAAGCAGCAAGGAAGCATATGTCCTTTGTCGTTTGATTGGCCTEST: gi|29683562|gb|CB679837.1|CB679837
genomic: TGCAGCGGCAAAATAAAAAGTGATAGCTGAAGGAAAATCTTGGATTCATGgtagtattca ... ctatggatagATGAATCGGAAGCAGCAAGGAAGCATATGTCCTTTGTCGTTTGATTGGCCT
EST: TGCAGCGGCAAAATAAAAAGTGATAGCTGAAGGAAAATCTTGGATTCATG ATGAATCGGAAGCAGCAAGGAAGCATATGTCCTTTGTCGTTTGATTGGCCTEST: gi|88479773|gb|CI417044.1|CI417044
genomic: TGCAGCGGCAAAATAAAAAGTGATAGCTGAAGGAAAATCTTGGATTCATGgtagtattca ... ctatggatagATGAATCGGAAGCAGCAAGGAAGCATATGTCCTTTGTCGTTTGATTGGCCT
EST: TGCAGCGGCAAAATAAAAAGTGATAGCTGAAGGAAAATCTTGGATTCATG ATGAATCGGAAGCAGCAAGGAAGCATATGTCCTTTGTCGTTTGATTGGCCTEST: gi|88504680|gb|CI432186.1|CI432186
genomic: TGCAGCGGCAAAATAAAAAGTGATAGCTGAAGGAAAATCTTGGATTCATGgtagtattca ... ctatggatagATGAATCGGAAGCAGCAAGGAAGCATATGTCCTTTGTCGTTTGATTGGCCT
EST: TGCAGCGGCAAAATAAAAAGTGATAGCTGAAGGAAAATCTTGGATTCATG ATGAATCGGAAGCAGCAAGGAAGCATATGTCCTTTGTCGTTTGATTGGCCTEST: gi|86862740|gb|CI331636.1|CI331636
genomic: TGCAGCGGCAAAATAAAAAGTGATAGCTGAAGGAAAATCTTGGATTCATGgtagtattca ... ctatggatagATGAATCGGAAGCAGCAAGGAAGCATATGTCCTTTGTCGTTTGATTGGCCT
EST: TGCAGCGGCAAAATAAAAAGTGATAGCTGAAGGAAAATCTTGGATTCATG ATGAATCGGAAGCAGCAAGGAAGCATATGTCCTTTGTCGTTTGATTGGCCT
genomic: TGCAGCGGCAAAATAAAAAGTGATAGCTGAAGGAAAATCTTGGATTCATGgtagtattca ... ctatggatagATGAATCGGAAGCAGCAAGGAAGCATATGTCCTTTGTCGTTTGATTGGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGATTTTTATGATGAAATGGCTAGCTTCGGTAGCTGATTTAGAATTTTGCAGCGGCAAAATAAAAAGTGATAGCTGAAGGAAAATCTTGGATTCATGgtagtattcatgcacatcaactggcattagacaatctcacattttgcctgcttaatttacacacaatcaaagcttaattctatgttaacatcaggattttgttgtgcctaagtaacacctcttttgctatggatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA