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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATATATATCATTGGAGATTCCTTTGGTGGATGTTTGGCTCTTTCTTTGGCATCACGAAATCCAGAAATTGATTTGGTTCTTATACTAGTAAATCCAGgcaggtgaaacccttttcgtctcaacattaaatttcagtgtcatatagcaatccaaaaataatatggttcttacactatagattttagaatatattaatctgttttctacagcaacatcatttgcgaaaactccgttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g25990.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g25990.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G031568_T01 (Zea mays), 5'ss of exon 4
CCAATATATATCATTGGAGATTCCTTTGGTGGATGTTTGGCTCTTTCTTTGGCATCACGAAATCCAGAAATTGATTTGGTTCTTATACTAGTAAATCCAGgcaggtgaaacccttttcgtctcaacattaaatttcagtg--tcatatagcaatccaaaaataatatggttcttacactatagattttagaatatattaatctgttttctacagcaacatcatttgcgaaaactccgttgcag
|| |||||| |  | |||||||| ||||| ||||   |||| ||  |  ||||| | || |||||  | |||||||||||||| ||||||||||| ||||||||||||   | |||  |  |  | |||   | | | |   || ||||   | |         ||| |||   |    | |  |||     | ||  |                                            
CCGATATATCTTGTCGGAGATTCATTTGGCGGATCCCTGGCACTGGCAGTGGCAGCTCGTAATCCGCAGATTGATTTGGTTCTCATACTAGTAAACCCAGgcaggtga--tcatttctggtttcagatttggtctgaataattcctatactcacct--------tattgttgccaactgacatgtttcg--ctttaccag-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58694016|gb|CK082703.1|CK082703
EST:     GGCATCACGAAATCCAGAAATTGATTTGGTTCTTATACTAGTAAATCCAG                         GCAATATTGCCTCTTTTGGAAATGGTGCCAAGCAACCTTCCTGTCACTCTC
genomic: GGCATCACGAAATCCAGAAATTGATTTGGTTCTTATACTAGTAAATCCAGgcaggtgaaa ... tccgttgcagGCAATATTGCCTCTTTTGGAAATGGTGCCAAGCAACCTTCCTGTCACTCTC
EST: gi|29675941|gb|CB672216.1|CB672216
EST:     GGGATCACGAAATCCAGAAATTGATTTGGTTCTTATACTAGTAAATCCAG                         GCAATATTGCCTCTTTTGGAAATGGTGCCAAGCAACCTTCCTGTCACTCTC
genomic: GGCATCACGAAATCCAGAAATTGATTTGGTTCTTATACTAGTAAATCCAGgcaggtgaaa ... tccgttgcagGCAATATTGCCTCTTTTGGAAATGGTGCCAAGCAACCTTCCTGTCACTCTC
EST: gi|29669452|gb|CB665727.1|CB665727
EST:     GGCATCACGAAATCCAGAAATTGATTTGGTTCTTATACTAGTAAATCCAG                         GCAATATTGCCTCTTTTGGAAATGGTGCCAAGCAACCTTCCTGTCACTCTC
genomic: GGCATCACGAAATCCAGAAATTGATTTGGTTCTTATACTAGTAAATCCAGgcaggtgaaa ... tccgttgcagGCAATATTGCCTCTTTTGGAAATGGTGCCAAGCAACCTTCCTGTCACTCTC