1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACGTGAAAGGCTAGTGGTACATGAATCATCAAATATTGTCATAACAAGAGAGACCTTGCAGTGCTTGAACGAAACGGAGTGGCTAAATGATGAGgtattttattgcttgtgctgttttcttctgtttgaactcaaaaggtgagcatatgggatttgacatgagctccttgacattttcag
species | Oryza sativa |
transcript | LOC_Os01g25370.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAACGGAGTGGCTAAATGATGAG GTCATAAATTTGTATCTTGAGCTGCTGAAAGAGAGGGAACTGAGAGAACCTEST: gi|29662158|gb|CB658433.1|CB658433
genomic: AAACGGAGTGGCTAAATGATGAGgtattttatt ... acattttcagGTCATAAATTTGTATCTTGAGCTGCTGAAAGAGAGGGAACTGAGAGAACCT
EST: CAAGAGAGACCTTGCAGTGCTTGAACGAAACGGAGTGGCTAAATGATGAG GTCATAAATTTGTATCTTGAGCTGCTGAAAGAGAGGGAACTGAGAGAACCTEST: gi|428598|gb|D24750.1|D24750
genomic: CAAGAGAGACCTTGCAGTGCTTGAACGAAACGGAGTGGCTAAATGATGAGgtattttatt ... acattttcagGTCATAAATTTGTATCTTGAGCTGCTGAAAGAGAGGGAACTGAGAGAACCT
EST: CAAGAGAGACCTTGCAGTGCTTGAACGAAACGGAGTGNCTAAATGATGAG GTCATAAATTTGTATCTTGAGCTGCTGAAAGAGAGGGAACTGAGAGAACCTEST: gi|218488315|gb|FG953540.1|FG953540
genomic: CAAGAGAGACCTTGCAGTGCTTGAACGAAACGGAGTGGCTAAATGATGAGgtattttatt ... acattttcagGTCATAAATTTGTATCTTGAGCTGCTGAAAGAGAGGGAACTGAGAGAACCT
EST: CAAGAGAGACCTTGCAGTGCTTGAACGAAACGGAGTGGCTAAATGATGAG GTCATAAATTTGTATCTTGAGCTGCTGAAAGAGAGGGAACTGAGAGAACCT
genomic: CAAGAGAGACCTTGCAGTGCTTGAACGAAACGGAGTGGCTAAATGATGAGgtattttatt ... acattttcagGTCATAAATTTGTATCTTGAGCTGCTGAAAGAGAGGGAACTGAGAGAACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGTGAAAGGCTAGTGGTACATGAATCATCAAATATTGTCATAACAAGAGAGACCTTGCAGTGCTTGAACGAAACGGAGTGGCTAAATGATGAGgtattttattgcttgtgctgttttcttctgtttgaactcaaaaggtgagcatatgggatttgacatgagctccttgacattttcag
- - - - - - - - - - - - - - - - - - - - - - AAGAGA