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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATCATGCAAATAATCTGGCCTCTAAAATTCGTAGCAACTTGACTAATTCGATGAAAGCTTTGGGTGTGGATATATTGACTGGTTTTGGCACCATTGTGgtaggtcatctatatctcccttgtttgtcatgaaagcagacaatttattattatgggtgttgcatatgttgcaagagtgagcattgacatattttatttt...

Basic information

species Oryza sativa
transcript LOC_Os01g23610.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g23610.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G145595_T02 (Zea mays), 5'ss of exon 3
AGATCATGCAAATAATCTGGCCTCTAAAATTCGTAGCAACTTGACTAATTCGATGAAAGCTTTGGGTGTGGATATATTGACTGGTTTTGGCACCATTGTGgtaggtcatctatatctcccttgt--ttgtcatgaaag-cagacaatttattattatgggtgttgcatatgttgcaagagtgagcattgacatattttatttt
 || |||||||||||||| || |||||||| || ||||||||||||||||| ||||||||| |||||||||||||| | |||||| |||||||||||||||| ||||| ||| ||||  | |||  ||||| | |||  || | | ||| ||||||    |||    |  ||||||||  | | | |   ||  | | |    
TGACCATGCAAATAATCTTGCATCTAAAATCCGCAGCAACTTGACTAATTCAATGAAAGCTCTGGGTGTGGATATACTCACTGGTATTGGCACCATTGTGgtgggtcacctacatctttcctgtgtttgtcttaaaaatcaaatattttgttatta-aaatgtcatgttggttgcaagcatcatcttgtccaggtataaga--

upper sequence: LOC_Os01g23610.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv05s0077g01210.t01 (Vitis vinifera), 5'ss of exon 3
AGATCATGCAAATAATCTGGCCTCTAAAATTCGTAGCAACTTGACTAATTCGATGAAAGCTTTGGGTGTGGATATATTGACTGGTTTTGGCACCATTGTGgtaggtcatctatatctcc-----------cttgtttgtcatgaaagcagacaatttattattatgggtgttgcatatgttgcaagagtgagca-ttgacat-attttatttt--------------------------------------------------------------------------------
 || ||||| ||||| || || |||||||||||||  || ||||||||||| |||||||| ||||||||||| ||||| || ||  |||| || ||| ||||| ||  || ||     |           |||    |  ||  ||    |    |  ||  |    || ||| |  |  || || | ||     || || | |   | |  |                                                                                
TGACCATGCCAATAACCTTGCTTCTAAAATTCGTAATAATTTGACTAATTCAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTGgtaagttgtccatgctgacaaagacaagatctttcaagcaattcaaattaaagcctggtttatgacagttttgaacttcatggaaaaatggatggtttacttgagcctgtcctatgctttaataaccaatctcatggttacaaaagtcctaatgatatttattatcaataatttcatttatgaatttattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58675783|gb|CK064470.1|CK064470
EST:     CGATGAAAGCTTTGGGTGTGGATATATTGACTGGTTTTGGCACCATTGTG                         GGAAAACAAAAAGTGAGATATGGAAAAGTTGGTTTTCCTGACAATGAAATC
genomic: CGATGAAAGCTTTGGGTGTGGATATATTGACTGGTTTTGGCACCATTGTGgtaggtcatc ... atgtgtgcagGGAAAACAAAAAGTGAGATATGGAAAAGTTGGTTTTCCTGACAATGAAATC
EST: gi|58670429|gb|CK059115.1|CK059115
EST:     CGATGAAAGCTTTGGGTGTGGATATATTGACTGGTTTTGGCACCATTGTG                         GGAAAACACACAGTGAGATATGGAAAAGTTGGTTTTCCTGACAA
genomic: CGATGAAAGCTTTGGGTGTGGATATATTGACTGGTTTTGGCACCATTGTGgtaggtcatc ... atgtgtgcagGGAAAACAAAAAGTGAGATATGGAAAAGTTGGTTTTCCTGACAA
EST: gi|58684178|gb|CK072865.1|CK072865
EST:     CGATGAAAGCTTTGGGTGTGGATATATTGACTGGTTTTGGCACCATTGTG                         GGAAAACAAAAAGTGAGATATGGAAAAGTTGGTTTTCCTGACAATGAAATC
genomic: CGATGAAAGCTTTGGGTGTGGATATATTGACTGGTTTTGGCACCATTGTGgtaggtcatc ... atgtgtgcagGGAAAACAAAAAGTGAGATATGGAAAAGTTGGTTTTCCTGACAATGAAATC