1 5' 3' | 2 5' 3' | 3 5' 3' |
ATCAGGAAGAACAAGCTGATATACCAGGACAAGCCGAGGCTCAAGACCGCACTTGAGATGCTCAGGACCAGCATGTACGTAGAGGACAGCTTGTCCAAGgtatgtacccctcgtcttcaaatcaactcaatatatgcaccaattagttctcacatctttaggatggcactaagatcacttgagtatgatcttggccatgtaagatgacagtaagattatttgaatttgatcctgacaatgtaatgttttttttggcag
species | Oryza sativa |
transcript | LOC_Os01g21310.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGAGATGCTCAGGACCAGCATGTACGTAGAGGACAGCTTGTCCAAG GTGAAGCTGCCGTTCTTCGTGCTGCACGGCGACGCCGACACGGTGACGGACEST: gi|88379080|gb|CI681912.1|CI681912
genomic: TTGAGATGCTCAGGACCAGCATGTACGTAGAGGACAGCTTGTCCAAGgtatgtaccc ... tttttggcagGTGAAGCTGCCGTTCTTCGTGCTGCACGGCGACGCCGACACGGTGACGGAC
EST: TTGAGATGCTCAGGACCAGCATGTACGTAGAGGACAGCTTGTCCAAG GTGAAGCTGCCGTTCTTCGTGCTGCACGGCGACGCCGACACGGTGACGGACEST: gi|58596166|gb|CK006694.1|CK006694
genomic: TTGAGATGCTCAGGACCAGCATGTACGTAGAGGACAGCTTGTCCAAGgtatgtaccc ... tttttggcagGTGAAGCTGCCGTTCTTCGTGCTGCACGGCGACGCCGACACGGTGACGGAC
EST: CACTTGAGATGCTCAGGACCAGCATGCACGTAGAGGACAGCTTGTCCAAG GTGAAGCTGCCGTTCTTCGTGCTGCACGGCGACGCCGACACGGTGACGGACEST: gi|88338092|gb|CI677080.1|CI677080
genomic: CACTTGAGATGCTCAGGACCAGCATGTACGTAGAGGACAGCTTGTCCAAGgtatgtaccc ... tttttggcagGTGAAGCTGCCGTTCTTCGTGCTGCACGGCGACGCCGACACGGTGACGGAC
EST: TTGAGATGCTCAGGACCAGCATGTACGTAGAGGACAGCTTGTCCAAG GTGAAGCTGCCGTTCTTCGTGCTGCACGGCGACGCCGACACGGTGACGGAC
genomic: TTGAGATGCTCAGGACCAGCATGTACGTAGAGGACAGCTTGTCCAAGgtatgtaccc ... tttttggcagGTGAAGCTGCCGTTCTTCGTGCTGCACGGCGACGCCGACACGGTGACGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAGGAAGAACAAGCTGATATACCAGGACAAGCCGAGGCTCAAGACCGCACTTGAGATGCTCAGGACCAGCATGTACGTAGAGGACAGCTTGTCCAAGgtatgtacccctcgtcttcaaatcaactcaatatatgcaccaattagttctcacatctttaggatggcactaagatcacttgagtatgatcttggccatgtaagatgacagtaagattatttgaatttgatcctgacaatgtaatgttttttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA