1 5' 3' | 2 5' 3' | 3 5' 3' |
TCCACAATGCATTCTTGAGCGCAGACCTTGCTCTCGCTGACGATTTGGCTATCAGCCGATCATCAGGAACAACAGCTCTTGCTGCTTTGATATTTGGAAGgtaatgtgaacatgcaatacatatctgtgtatgctgcagatcaccatgcattatgcttgtatgtgtgctcatttctgtttccatcatatgtgcag
species | Oryza sativa |
transcript | LOC_Os01g19130.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCAGCCGATCATCAGGAACAACAGCTCTTGCTGCTTTGATATTTGGAAG GCAGCTGTTGGTCGCGAATGCTGGGGACTGCCGCGCGGTCCTGTGTCGGAAEST: gi|88954575|gb|CI718554.1|CI718554
genomic: ATCAGCCGATCATCAGGAACAACAGCTCTTGCTGCTTTGATATTTGGAAGgtaatgtgaa ... atatgtgcagGCAGCTGTTGGTCGCGAATGCTGGGGACTGCCGCGCGGTCCTGTGTCGGAA
EST: ATCAGCCGATCATCAGGAACAACAGCTCTTGCTGCTTTGATATTTGGAAG GCAGCTGTTGGTCGCGAATGCTGGGGACTGCCGCGCGGTCCTGTGTCGGAAEST: gi|33687200|gb|CF315439.1|CF315439
genomic: ATCAGCCGATCATCAGGAACAACAGCTCTTGCTGCTTTGATATTTGGAAGgtaatgtgaa ... atatgtgcagGCAGCTGTTGGTCGCGAATGCTGGGGACTGCCGCGCGGTCCTGTGTCGGAA
EST: ATCAGCCGATCATCAGGAACAACAGCTCTTGCTGCTTTGATATTTGGAAG GCAGCTGTTGGTCGCGAATGCTGGGGACTGCCGCGCGGTCCTGTGTCGGAAEST: gi|88671772|gb|CI725888.1|CI725888
genomic: ATCAGCCGATCATCAGGAACAACAGCTCTTGCTGCTTTGATATTTGGAAGgtaatgtgaa ... atatgtgcagGCAGCTGTTGGTCGCGAATGCTGGGGACTGCCGCGCGGTCCTGTGTCGGAA
EST: ATCAGCCGATCATCAGGAACAACAGCTCTTGCTGCTTTGATATTTGGAAG GCAGCTGTTGGTCGCGAATGCTGGGGACTGCCGCGCGGTCCTGTGTCGGAA
genomic: ATCAGCCGATCATCAGGAACAACAGCTCTTGCTGCTTTGATATTTGGAAGgtaatgtgaa ... atatgtgcagGCAGCTGTTGGTCGCGAATGCTGGGGACTGCCGCGCGGTCCTGTGTCGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCACAATGCATTCTTGAGCGCAGACCTTGCTCTCGCTGACGATTTGGCTATCAGCCGATCATCAGGAACAACAGCTCTTGCTGCTTTGATATTTGGAAGgtaatgtgaacatgcaatacatatctgtgtatgctgcagatcaccatgcattatgcttgtatgtgtgctcatttctgtttccatcatatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG