Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCGTCACGGTGATTTCTTCTCCGCGCTGCTCAAGGCGCAGCCGCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccgagctattccgttgtttgcatggaccaacagttcacactgaagattgttactgtgctcctcttctaacagtttttgtgtgtgatcctttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g17170.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g17170.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G081462_T02 (Zea mays), 5'ss of exon 3
GAACCGTCACGGTGATTTCTTCTCCGCGCTGCTCAAGGCGCAGCCGCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccgagctattccgttgtttgcatggaccaacagttcacactgaagattgttactgtgctcctcttctaacagtt---tttgtgtgtgatcctttgcag
|||| | ||||| || |||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||   ||||   ||    || |||||  | |  |||   ||| ||| || ||||| ||||||| |   ||  | | ||| | |||||||
GAACAGGCACGGCGACTTCTTCTCTGCCCTGCTCAAGGCTCAGCCGCAGTTCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatttc-gagctattctcctgttaatata---catcagttagctccaaag---gttgctgcgcccctctcctaacagctgtgttactatatgaccttttgcag

upper sequence: LOC_Os01g17170.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G043109_T01 (Zea mays), 5'ss of exon 3
GAACCGTCACGGTGATTTCTTCTCCGCGCTGCTCAAGGCGCAGCCGCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctc-cgagctattccgttgtt-tgcatggaccaacagttcacactgaagattgttactgtgctcctcttctaacagtttttgtgtgtgatcctttgcag
|||| | || ||||| |||||||| || ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||  ||| | || ||| |  | |  || || |  ||| ||||   ||||| ||  | || | || | |  |   ||| |||||||||
GAACAGGCATGGTGACTTCTTCTCTGCCCTGCTGAAGGCTCAGCCGCAGTTCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatttttcgagctattcttttgctatgtatgtag-atcgattaactccaaaggttgt---tgtgccccattgctgatagctgtgttacttga-cctttgcag

upper sequence: LOC_Os01g17170.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT3G56940.2 (Arabidopsis thaliana), 5'ss of exon 4
GAACCGTCACGGTGATTTCTTCTCCGCGCTGCTCAAGGCGCAGCCGCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccgagctattccgttgtttgcatggaccaacagttcacactgaagattgttactgtgctcctcttctaacagtttttgtgtgtgatcctttgcag
||||||||| |||||||||||||| ||  || | || || ||||| ||||||||||| |||||| | |||||||||||||| || ||||||||||||||||||||     | |||  |  |  ||             ||||| || ||    |||    |  ||    |   ||| ||  || |         |||| |||
GAACCGTCATGGTGATTTCTTCTCTGCTTTGATGAAAGCTCAGCCTCAGTTCCTCAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGgtaatt---aaactaaactctcttt-------------agttctcaatgtgtcttgcacattggcctaaccagtaagaggattgg---------ctttacag

upper sequence: LOC_Os01g17170.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv08s0040g00390.t01 (Vitis vinifera), 5'ss of exon 3
GAACCGTCACGGTGATTTCTTCTCCGCGCTGCTCAAGGCGCAGCCGCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccgagctattccgttgtttgcatggaccaacagttcacactgaagattgttactgtgctcctcttctaacagtttttgtgtgtgatcctttgcag-----------------------------------------------------
|||| | || |||||||||||||| ||  || | ||||| || || ||||||||||| || |||||||| ||| | ||| | || ||||||||||| |||||||| |      || |  ||| | | |||  |     |    | | || | ||  |  ||    |  |   |  |  || |||   | |    |||  |                                                       
GAACAGGCATGGTGATTTCTTCTCTGCATTGATGAAGGCACAACCCCAGTTCCTCAATGATTGGAAGGCAAAGTTGTGGGCTCGATTCTTCTGCCTATCGgtaat-tatagtataataagtt-tctacattcaattgtatactagattgcaaatattatcttaattttttaccctagtgtgtttaaatctttggcttctcgagaacctctgggattcctctggtcctcttatgacttcccaaatttgtcttgcag

upper sequence: LOC_Os01g17170.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S97_248V6.1 (Physcomitrella patens), 5'ss of exon 2
GAACCGTCACGGTGATTTCTTCTCCGCGCTGCTCAAGGCGCAGCCGCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccgagctattccgttgtttgcatggaccaacagttcacactgaagattgttactgtgctcctcttctaa---cagtttttgtgtgtgatcctttgcag
|||||||||||||||||||||||| || ||  | ||||| ||||| |||||||| ||||||||||||||||| || ||| | || ||||||||||| || ||||  | |       ||| ||  |||| ||    |    |  |   || |||| || ||| |    |  |  ||      | |||| | |||    |  |  | 
GAACCGTCACGGTGATTTCTTCTCGGCTCTCATGAAGGCACAGCCTCAGTTCCTAAACGACTGGAAGGCCAAACTTTGGGCTCGTTTCTTCTGCCTTTCTgtaagtttcac----ctccatttcttgcctgagtgattcctgtatgttgtagatagtaactatctgacgatcttaggtctgggttttatctgtatggcacttaa-

upper sequence: LOC_Os01g17170.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S239_18V6.2 (Physcomitrella patens), 5'ss of exon 2
GAACCGTCACGGTGATTTCTTCTCCGCGCTGCTCAAGGCGCAGCCGCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccgagctattccgttgtttgcatggaccaacagttcac----actgaagattgttactgtgctcctcttctaacagtttttgtgtgtgatcctttgcag
|||||||||||||||||||||||| || ||  | ||||| ||||| |||||  | || ||||||||||||||||||||| | || |||||||||||||| ||||       | | || |    ||| ||  |    |    ||||    |  | |   ||  ||  ||  | |  | |  || | |||           |      
GAACCGTCACGGTGATTTCTTCTCTGCACTCATGAAGGCACAGCCCCAGTTTTTGAATGACTGGAAGGCCAAGCTCTGGGCTCGTTTCTTCTGCCTCTCTgtaagtatttcgttctttctgcttttccagtgtttgatgtgtcaccacgatcggaccctgacacaatgggcattct-tgtcaatctttaaacactgcagtg-----

upper sequence: LOC_Os01g17170.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ28505 (Selaginella moellendorffii), 5'ss of exon 3
GAACCGTCACGGTGATTTCTTCTCCGCGCTGCTCAAGGCGCAGCCGCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccgagctattccgttgtttgcatggaccaacagttcacactgaagattgttactgtgctcctcttctaacagtttttgtgtgtgatcctttgcag
|||| | ||||| || |||||||| ||| |||| || || ||||| |||||| | ||||||||||||||||| |||||| | || |||||||| ||||||||||      ||| |  |  | | |    | |      | ||   |  || | |  |   |  |||| |  |||  |||                       
GAACAGGCACGGCGACTTCTTCTCGGCGTTGCTGAAAGCCCAGCCTCAGTTCTTGAACGACTGGAAGGCCAAACTCTGGGCTCGCTTCTTCTGTCTCTCGgtaa------agcaaacctttggctcttcttgg-----aattttta--gatgctcatgcttccgctcttgctcttccag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|300216174|gb|HO087959.1|HO087959
EST:     TCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|86250756|gb|CI007619.1|CI007619
EST:     CGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: CGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|29685252|gb|CB681527.1|CB681527
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|38472311|gb|CF956442.1|CF956442
EST:     TCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|38475921|gb|CF960054.1|CF960054
EST:     TCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|33676438|gb|CF304677.1|CF304677
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|33675406|gb|CF303645.1|CF303645
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|29662325|gb|CB658600.1|CB658600
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|88985209|gb|CI006863.1|CI006863
EST:     TTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|88991629|gb|CI019807.1|CI019807
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|86854029|gb|CI252020.1|CI252020
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|29676339|gb|CB672614.1|CB672614
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|88975963|gb|CI024214.1|CI024214
EST:     ACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: ACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|66912779|gb|CX099627.1|CX099627
EST:     TCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|88904204|gb|CI001937.1|CI001937
EST:     TCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|58604355|gb|CK014883.1|CK014883
EST:     TCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|89172824|gb|CI022703.1|CI022703
EST:     TCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|86255000|gb|CI017120.1|CI017120
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|33674878|gb|CF303117.1|CF303117
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|29672479|gb|CB668754.1|CB668754
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|89167736|gb|CI021435.1|CI021435
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|38476267|gb|CF960400.1|CF960400
EST:     TCCTCAATGACTGGAAGGGCAAGCTCTGGTCACGGTTCTTCTGGCTCTCG                         GTGTATGTGAACATGTACCTAAATGATTGC-AACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|38475252|gb|CF959385.1|CF959385
EST:     TCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|88966000|gb|CI006758.1|CI006758
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|33675647|gb|CF303886.1|CF303886
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|29616676|gb|CB621688.1|CB621688
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|29619026|gb|CB624038.1|CB624038
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|33675994|gb|CF304233.1|CF304233
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|38472141|gb|CF956272.1|CF956272
EST:     CACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTGCTACATTCTATGAA
genomic: CACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|86493917|gb|CI136550.1|CI136550
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|13420468|gb|AU174558.1|AU174558
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|38476396|gb|CF960529.1|CF960529
EST:     TCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|88847736|gb|CI018427.1|CI018427
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|29615138|gb|CB620151.1|CB620151
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|38481331|gb|CF965420.1|CF965420
EST:     TCCTCAATGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
EST: gi|86250839|gb|CI007702.1|CI007702
EST:     TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCG                         GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA
genomic: TCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 181

GAACCGTCACGGTGATTTCTTCTCCGCGCTGCTCAAGGCGCAGCCGCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccg ... tcctttgcagGTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAAGGGATTGGTCTGGACACCAAAGAATTCGACATGCATGTGATAATTGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACCGTCACGGTGATTTCTTCTCCGCGCTGCTCAAGGCGCAGCCGCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGTCACGGTTCTTCTGCCTCTCGgtaatctccgagctattccgttgtttgcatggaccaacagttcacactgaagattgttactgtgctcctcttctaacagtttttgtgtgtgatcctttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT