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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAATTGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgacacccatgcttttcgacatctcttgacctttgcaaagatttaaacagtgaggcatgcttgggagtaaatatgtaatcaaattatatcgtag...

Basic information

species Oryza sativa
transcript LOC_Os01g16890.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g16890.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G027728_T01 (Zea mays), 5'ss of exon 3
AAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAATTGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgacacccatgcttttcgacatctcttgacctttgcaaagatttaaacagtgaggcatgcttgggagtaaatatgtaatcaa-attatatcgtag
||||||||||||||  ||||||||||||| || ||||| ||||| |||||||||||||| |||||| ||||||||||||| |||||||| ||||| |||||||||||  || |  || ||          | |||   ||       | | |    |  |   |  |     ||  || ||| |||   || |||| ||| 
AAGCTAGTGATCATCGCTAACAACTGCCCGCCCCTTCGTAAGTCTGAAATTGAGTACTATGCTATGCTGGCCAAGGTCACTGTCCACCACTTCCATGGAAgtaagtttgcatcactgattcgttttgctgcatgatagttcatttattattattgctatgatctagtcctctgttgat-tgtgatctgcatgatattgtat

upper sequence: LOC_Os01g16890.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G050460_T01 (Zea mays), 5'ss of exon 3
AAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAATTGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgacacccatgcttttcgacatctcttgacctttgcaaagatttaaacagtgaggcatgcttgggagtaaatatgtaatcaaattatatcgtag---
||||||||||||||| |||||||||| || || ||||||||||| |||||||||||||| |||||| |||| ||||| || |||||||| ||||| |||||||||||  || || | || ||   | ||  | ||  || |||     |     | ||     ||   |   | |  |      |    |||   | |     
AAGCTAGTGATCATTGCTAACAACTGTCCTCCGCTTCGGAAGTCTGAAATTGAGTACTATGCTATGCTGGCTAAGGTGACAGTCCACCACTTCCATGGAAgtaagttatcatcccttctgttt--cttcaatcgatgtt-gcattatctagggaaatgtcaactgtcagttggcatgttaccttttcttttagcccctgattt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88736230|gb|CI759738.1|CI759738
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
EST: gi|88302833|gb|CI668679.1|CI668679
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
EST: gi|88350047|gb|CI621978.1|CI621978
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
EST: gi|88580500|gb|CI697434.1|CI697434
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCATCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
EST: gi|88331484|gb|CI675819.1|CI675819
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCATCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
EST: gi|88347491|gb|CI637431.1|CI637431
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
EST: gi|88593163|gb|CI711321.1|CI711321
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
EST: gi|88305970|gb|CI634967.1|CI634967
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCGCCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACACCCTGCGGTAAATAC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATAC
EST: gi|88591785|gb|CI709839.1|CI709839
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
EST: gi|88761833|gb|CI771389.1|CI771389
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
EST: gi|88588610|gb|CI706439.1|CI706439
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
EST: gi|88570474|gb|CI661847.1|CI661847
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
EST: gi|88405170|gb|CI685624.1|CI685624
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
EST: gi|86889679|gb|CI299877.1|CI299877
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAA                         ATCATGTCGATCTGGGGACAGCCTGTGGTA
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTA
EST: gi|88763053|gb|CI772609.1|CI772609
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
EST: gi|55413584|gb|CV725960.1|CV725960
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
EST: gi|88572868|gb|CI664439.1|CI664439
EST:     TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAA                         ATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC
genomic: TGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGGAAgtaagttgac ... ttgttttcagATAATGTCGATCTGGGGACAGCCTGTGGTAAATACTTCCGTGTTTGCTGCC