1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTTGCTAACCGCGCAGCTGCTTACCAAGCAATGGGCCAAATTTTAGATGCAATAGCAGATTGCTCACTAGCCATAGCCCTTGACTCCAATTATTCTAAGgttcgttaaagttttcttttctcttgatcgaaatgacaactgtagccatgttctttccttttctttatttcgaagagtcttgccaaaactatgtgtataa...
species | Oryza sativa |
transcript | LOC_Os01g16680.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAATAGCAGATTGCTCACTAGCCATAGCCCTTGACTCCAATTATTCTAAG GCTATTTCTAGAAGAGCTGGTTTGTATGAACTTATAAGGGACTATGATCAGEST: gi|4715821|gb|AU056937.1|AU056937
genomic: CAATAGCAGATTGCTCACTAGCCATAGCCCTTGACTCCAATTATTCTAAGgttcgttaaa ... atttttgtagGCTATTTCTAGAAGAGCTGGTTTGTATGAACTTATAAGGGACTATGATCAG
EST: CAATAGCAGATTGCTCACTAGCCATAGCCCTTGACTCCAATTATTCTAAG GCTATTTCTAGAAGAGCTGGTTTGTATGAACTTATAAGGGACTATGATCAG
genomic: CAATAGCAGATTGCTCACTAGCCATAGCCCTTGACTCCAATTATTCTAAGgttcgttaaa ... atttttgtagGCTATTTCTAGAAGAGCTGGTTTGTATGAACTTATAAGGGACTATGATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGCTAACCGCGCAGCTGCTTACCAAGCAATGGGCCAAATTTTAGATGCAATAGCAGATTGCTCACTAGCCATAGCCCTTGACTCCAATTATTCTAAGgttcgttaaagttttcttttctcttgatcgaaatgacaactgtagccatgttctttccttttctttatttcgaagagtcttgccaaaactatgtgtataa
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