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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACATTTATAGTTTTGGTGTGGTCTTTCTTGAGCTAATTACTGGACGAAGAGCGCTTGACAGCAATCGGCCACCTGATGAACAAGACTTGGTTGCATGGgtatgtttctatcaataccagaatgttacgaaaggtcacaatgatcatattttcacaaagaaaaacaaaatgaggataaaagatgtattgtttaaagggc...

Basic information

species Oryza sativa
transcript LOC_Os01g15470.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g15470.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G074381_T01 (Zea mays), 5'ss of exon 4
TGACATTTATAGTTTTGGTGTGGTCTTTCTTGAGCTAATTACTGGACGAAGAGCGCTTGACAGCAATCGGCCACCTGATGAACAAGACTTGGTTGCATGGgtatgtttctatcaataccagaatgttacgaaaggtcacaatgatcatattttcacaaagaaaaacaaaatgaggat-aaaagatgtattgtttaaagggc---
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TGACATCTATAGTTTTGGCGTCGTTTTCCTTGAGCTAATTACAGGTCGAAGACCACAAGACAGTGATCGGCCTCCTGAGGAACAAGACCTAGTTGCATGGgtatgtttttatt----ttagaatgcattgaagtgctccaataattagttttatataaagaaaatcagagcatatattaaaatagctattgaagataaattaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25800162|gb|CA756123.1|CA756123
EST:     GAGCGCTTGACAGCAATCGGCCACCTGATGAACAAGACTTGGTTGCATGG                         GCTCGTCCATTGGTCAA-GACCAA-GGAAATTTCCAAA
genomic: GAGCGCTTGACAGCAATCGGCCACCTGATGAACAAGACTTGGTTGCATGGgtatgtttct ... ttgtctgcagGCTCGTCCATTGTTCAAAGACCAAAGGAAATTTCCAAA