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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAAAAAAGATGTGGCCTATCTGTATGGAGAAGATCGTCTCACAACTTCTACGACCCATAATACCATGGTTCTTGGATAAGTTCAAACCTTGGACAGTTgtacggtttccttcttgcctcttgcttttgcaattgatgagattccactatatgaattgtaccttgaagttctagttttgccatgaagttctataaatttatttttatttctttaagtaggcattgccctcaatagctcaactgttgtagttatcccgcag

Basic information

species Oryza sativa
transcript LOC_Os01g14050.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g14050.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G144403_T01 (Zea mays), 5'ss of exon 4
AATAAAAAAGATGTGGCCTATCTGTATGGAGAAGATCGTCTCACAACTTCTACGACCCATAATACCATGGTTCTTGGATAAGTTCAAACCTTGGACAGTTgtacggtttccttcttgcctcttgcttttgcaattgatgagattccactatatga-attgtaccttgaagttctagttttgccatgaagttctataa-atttatttttatttct-ttaagtaggcattgcc-----------ctcaatagctcaactgttgtagttatcccgcag
|||  | |||||||||||| ||||||||||||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    |||| ||||   ||| || |   || | | | ||  ||| ||||| ||| | ||| |||  | | |   |||||| | | | |  |||| |||  ||||||||||||| |            |||  ||||| | ||| ||| ||||| | ||||
AATCGACAAGATGTGGCCTGTCTGTATGGAGAAGATCGTTTCAAAACTTCTACGGCCCATCATACCATGGTTCTTGGATAAGTTCAAACCTTGGACAGTCgtatggtttccttctttttccttggttttatgattcat-attctctattttgtggcattttacctcgaactgctactttaacaaagtttttctatgacagtcacatttagttccattaagtaggcattcctatcggtcgattctctgtagcttacctgatgttgttattctgcag

upper sequence: LOC_Os01g14050.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA15G39380.1 (Glycine max), 5'ss of exon 3
AATAAAAAAGATGTGGCCTATCTGTATGGAGAAGATCGTCTCACAAC---TTCTACGACCCATAATACCATGGTTCTTGGATAAGTTCAAACCTTGGACAGTTgtacggtttccttcttgcctcttgcttttgcaattgatgagattccactatatgaattgtaccttgaagttctagttttgccatgaagttctataaatttatttttatttctttaagtaggcattgccctcaatagctcaactgttgtagttatcccgcag
     |||| || ||||| || || |||||  ||||   ||| |||    |  |    || ||||||||||||||||| || |||| |||||||||||| | |||| | || | | ||   |  ||   ||||   |||||     |  |  | |  |  || |  |  |    | | |||    || |  || ||| |||||   | |||                                                     
---TGAAAACATATGGCCCATATGCATGGAACAGATTACCTCTCAAAAGATATTGTTCCCTATAATACCATGGTTCTTAGAGAAGTACAAACCTTGGACTGCTgtatgatt-cgtactgttcggtta--tttgtctttgattgtgcttgatcaaacaatatgaatttcaa----ccattttcttaattattttatatgaattt-catatat-----------------------------------------------------