1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGTTGTCAACATTGCTCTATCTACACGTTATGAGATCAACAGGGCCTTTGCCAATCTTCGTCAGATTGCTCTTGGCCGGGACATCAAGAAGTTCCTTATTgtatgtctgtgatgcttttgtgtttgtataattattgttcccatagcaaactgaatatttatgatctataccacacttttag
species | Oryza sativa |
transcript | LOC_Os01g12650.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAATCTTCGTCAGATTGCTCTTGGCCGGGACATCAAGAAGTTCCTTATT GTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTCEST: gi|86252124|gb|CI055861.1|CI055861
genomic: CCAATCTTCGTCAGATTGCTCTTGGCCGGGACATCAAGAAGTTCCTTATTgtatgtctgt ... acacttttagGTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTC
EST: TCAAGAAGTTCCTTATT GTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTCEST: gi|10930586|gb|AU160860.1|AU160860
genomic: TCAAGAAGTTCCTTATTgtatgtctgt ... acacttttagGTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTC
EST: CATCAAGAAGTTCCTTATT GTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTCEST: gi|88844688|gb|CI021263.1|CI021263
genomic: CATCAAGAAGTTCCTTATTgtatgtctgt ... acacttttagGTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTC
EST: CCAATCTTCGTCAGATTGCTCTTGGCCGGGACATCAAGAAGTTCCTTATT GTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTCEST: gi|8856546|gb|AU093864.1|AU093864
genomic: CCAATCTTCGTCAGATTGCTCTTGGCCGGGACATCAAGAAGTTCCTTATTgtatgtctgt ... acacttttagGTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTC
EST: CCGGGACATCAAGAAGTTCCNTATT GTGATTGCTGGCCTTTGGTTGCTTCCTGTTCTTGGAAGCTGCTNCAACTTCEST: gi|86508381|gb|CI151014.1|CI151014
genomic: CCGGGACATCAAGAAGTTCCTTATTgtatgtctgt ... acacttttagGTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTC
EST: AAGAAGTTCCTTATT GTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTCEST: gi|86508019|gb|CI150652.1|CI150652
genomic: AAGAAGTTCCTTATTgtatgtctgt ... acacttttagGTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTC
EST: GACATCAAGAAGTTCCTTATT GTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTCEST: gi|88839430|gb|CI005218.1|CI005218
genomic: GACATCAAGAAGTTCCTTATTgtatgtctgt ... acacttttagGTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTC
EST: AATCTTCGTCAGATTGCTCTTGGCCGGGACATCAAGAAGTTCCTTATT GTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTC
genomic: AATCTTCGTCAGATTGCTCTTGGCCGGGACATCAAGAAGTTCCTTATTgtatgtctgt ... acacttttagGTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGTCAACATTGCTCTATCTACACGTTATGAGATCAACAGGGCCTTTGCCAATCTTCGTCAGATTGCTCTTGGCCGGGACATCAAGAAGTTCCTTATTgtatgtctgtgatgcttttgtgtttgtataattattgttcccatagcaaactgaatatttatgatctataccacacttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT