1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGTGTTGGAGTGTGTGCCAGCTCCTGTGGCAGCTGCTGCAACATCAGCATTGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAGgttcagttattcagtatacttcacagttcacacttctacagatatatgttcattttcctcaacagtttagattaagccagttgtatctattctgattctt...
species | Oryza sativa |
transcript | LOC_Os01g12560.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAG GTCTTAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCEST: gi|86494036|gb|CI136669.1|CI136669
genomic: TGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAGgttcagttat ... tgtaatgcagGTCTTAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCC
EST: TGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAG GTCTTAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCEST: gi|88227693|gb|CI227173.1|CI227173
genomic: TGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAGgttcagttat ... tgtaatgcagGTCTTAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCC
EST: TGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAG GTCTTAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCEST: gi|88688488|gb|CI732064.1|CI732064
genomic: TGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAGgttcagttat ... tgtaatgcagGTCTTAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCC
EST: TGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAG GTCTTAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCEST: gi|112786419|gb|EE590727.1|EE590727
genomic: TGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAGgttcagttat ... tgtaatgcagGTCTTAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCC
EST: TGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAG GTCTTAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCEST: gi|88688390|gb|CI731966.1|CI731966
genomic: TGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAGgttcagttat ... tgtaatgcagGTCTTAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCC
EST: TGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAG GTCTTAGTTTACCATGACTTGTTAGGGATGATGCAACATCNCACACEST: gi|88690567|gb|CI734646.1|CI734646
genomic: TGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAGgttcagttat ... tgtaatgcagGTCTTAGTTTACCATGACTTGTTAGGGATGATGCAACATC-CACAC
EST: TGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAG GTCTTAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCC
genomic: TGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAGgttcagttat ... tgtaatgcagGTCTTAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGTTGGAGTGTGTGCCAGCTCCTGTGGCAGCTGCTGCAACATCAGCATTGCAAATCCCAACCATTGGAATTGGTGCTGGACCATTCTGCAGTGGACAGgttcagttattcagtatacttcacagttcacacttctacagatatatgttcattttcctcaacagtttagattaagccagttgtatctattctgattctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA