1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCCGAATCCAATGGCCACTGATGGTCCTGGAGGAGACTCTGGTTCATTGTCTATCGCTAGTAATGATAATAGAAAGGTCTCCCGTGAAGATATTGAACTTgtaagatctcaagctatgctgaagcttttggatttttcagatggcatccctctacagggccagtctagactgttgctaactaattaactaaattggataccctgttgcag
species | Oryza sativa |
transcript | LOC_Os01g12080.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTATCGCTAGTAATGATAATAGAAAGGTCTCCCGTGAAGATATTGAACTT GTGCAGAATTTGATAGAGCGCTGTCTACAGCTATACATGAACAAAGGAGAGEST: gi|88342702|gb|CI657196.1|CI657196
genomic: CTATCGCTAGTAATGATAATAGAAAGGTCTCCCGTGAAGATATTGAACTTgtaagatctc ... cctgttgcagGTGCAGAATTTGATAGAGCGCTGTCTACAGCTATACATGAACAAAGGAGAG
EST: CTATCGCTAGTAATGATAATAGAAAGGTCTCCCGTGAAGATATTGAACTT GTGCAGAATTTGATAGAGCGCTGTCTACAGCTATACATGAACAAAGGAGAGEST: gi|58590445|gb|CF988753.1|CF988753
genomic: CTATCGCTAGTAATGATAATAGAAAGGTCTCCCGTGAAGATATTGAACTTgtaagatctc ... cctgttgcagGTGCAGAATTTGATAGAGCGCTGTCTACAGCTATACATGAACAAAGGAGAG
EST: TATCGCTAGGGAATGATAATAGAAAGGTCTCCCGTGAAGATATTGAACTT GTGCAGAATTTGATAGAGCGCTGTCTACAGCTATACATGAACAAAGGAGAG
genomic: TATCGCTA-GTAATGATAATAGAAAGGTCTCCCGTGAAGATATTGAACTTgtaagatctc ... cctgttgcagGTGCAGAATTTGATAGAGCGCTGTCTACAGCTATACATGAACAAAGGAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGAATCCAATGGCCACTGATGGTCCTGGAGGAGACTCTGGTTCATTGTCTATCGCTAGTAATGATAATAGAAAGGTCTCCCGTGAAGATATTGAACTTgtaagatctcaagctatgctgaagcttttggatttttcagatggcatccctctacagggccagtctagactgttgctaactaattaactaaattggataccctgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA