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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGGTGGAAATTGAGCATGTCGACGCTGTAACACTCGAGAAGCTTGAGAAACAGGGCATCGATTGTGAGCCCAAAGCCTCCACCATCATGATTATTCAAgtaaactttcacttcttgttctaaccatctctatatttcgttgttgctaaattttagtacaagttatctttagtacctttttactgtgaagatgaaacct...

Basic information

species Oryza sativa
transcript LOC_Os01g10280.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g10280.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G133121_T02 (Zea mays), 5'ss of exon 3
GACGGTGGAAATTGAGCATGTCGACGCTGTAACACTCGAGAAGCTTGAGAAACAGGGCATCGATTGTGAGCCCAAAGCCTCCACCATCATGATTATTCAAgtaaactt-tcacttcttgttctaaccatctctatatttcgttg-ttgctaaattttagtacaagttatctttagtacctttttactgtgaagatgaaacct-------
 || ||||| ||||||||||| || || |  ||||| |||||||| || ||||||||| | || || ||||| ||||||||||| |||| ||||||||| |||| ||  ||||| ||  || |     |   | | || ||     ||  | | ||||  |||| || |||  | |     |||  |||| |   | || |        
AACAGTGGAGATTGAGCATGTTGATGCCGCCACACTGGAGAAGCTGGAAAAACAGGGCGTTGACTGCGAGCCTAAAGCCTCCACAATCACGATTATTCAGgtaagctgatcactgctacttattcatctgattttgttacgccaactgtaacacttta--acaaattgtctc-actgatagtttgttgtgtatcggtaatcaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66917582|gb|CX104430.1|CX104430
EST:     AACAGGGCATCGATTGTGAGCCCAAAGCCTCCACCATCATGATTATTCAA                         GACAAGTACAGGCAGAAAACTCATTTCTCAAAATTTGGAATTCCGTTACCT
genomic: AACAGGGCATCGATTGTGAGCCCAAAGCCTCCACCATCATGATTATTCAAgtaaactttc ... tttatttcagGACAAGTACAGGCAGAAAACTCATTTCTCAAAATTTGGAATTCCGTTACCT