1 5' 3' | 2 5' 3' | 3 5' 3' |
TGTTGCTGCTGCTGCTCCTGCTGCCGGTGGTGCTGGTGGTGCTCCTGCAGCTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGATgtaagaccaatgttcttatttgtctcaattagcatattttgctcattcattatgtctatggtagtttgacatgacttctattcaatgtataatatcgtat...
species | Oryza sativa |
transcript | LOC_Os01g09510.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGAAGAGAAGGAAGAAAGTGATGAT GACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCAEST: gi|3760653|gb|C97907.1|C97907
genomic: CGAAGAGAAGGAAGAAAGTGATGATgtaagaccaa ... ttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
EST: CTGAGGCGAAGAANGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGAT GNCATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCAEST: gi|86855151|gb|CI263218.1|CI263218
genomic: CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGATgtaagaccaa ... ttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
EST: CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGAT GACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCAEST: gi|88995211|gb|CI036786.1|CI036786
genomic: CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGATgtaagaccaa ... ttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
EST: TGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGAT GACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCAEST: gi|33810146|gb|CF330962.1|CF330962
genomic: TGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGATgtaagaccaa ... ttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
EST: CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGAT GACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCAEST: gi|88446889|gb|CI528932.1|CI528932
genomic: CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGATgtaagaccaa ... ttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
EST: CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGAT GACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCAEST: gi|86534426|gb|CI174632.1|CI174632
genomic: CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGATgtaagaccaa ... ttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
EST: CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGAT GACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCAEST: gi|425968|gb|D22650.1|D22650
genomic: CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGATgtaagaccaa ... ttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
EST: TGAGGCGAAGAAAGAAGATTAAGGTCGAAGAGAAGGAAGAAAGTGATGAT GACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
genomic: TGAGGCGAAGAAAGAAGA-TAAGGTCGAAGAGAAGGAAGAAAGTGATGATgtaagaccaa ... ttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGCTGCTGCTGCTCCTGCTGCCGGTGGTGCTGGTGGTGCTCCTGCAGCTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGATgtaagaccaatgttcttatttgtctcaattagcatattttgctcattcattatgtctatggtagtttgacatgacttctattcaatgtataatatcgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA