Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGACCCCCATTTGCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaattttgttttctagtatataatatgcattatacagatatttgtgatgtaatacatttcagtgccatgttctatgactaatactagtattgta...

Basic information

species Oryza sativa
transcript LOC_Os01g09120.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g09120.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G176506_T04 (Zea mays), 5'ss of exon 3
GACTGACCCCCATTTGCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaattttgttttctagtat-ataatatgcattatacagatatttgtgatgtaatacatttca-gtgcca-tgttctatgactaatactagtattgta
||||||| |||  |||||| ||||||| || || ||||||||||||||||||  |||| ||||||||| |||  |||||  |  |||||  | | || ||||| ||    ||| |   ||||   || |   |  |   | |||| |||    |||| || | || | 
GACTGACTCCCGCTTGCCTAACATGCCAATTATTTATGCTAGTGATGCTTTTACATCATTAACAGgtaattgt-ttttgactgttagtaccagagtacgcattctagcagtatgtaatatgtgcaacttccaatatattactgttatattttcaata-tattgtttt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29660689|gb|CB656964.1|CB656964
EST:     GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG                         GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: gi|29660992|gb|CB657267.1|CB657267
EST:     GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG                         GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: gi|86505958|gb|CI148591.1|CI148591
EST:     GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG                         GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: gi|29657673|gb|CB653948.1|CB653948
EST:     GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG                         GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: gi|29680769|gb|CB677044.1|CB677044
EST:     GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG                         GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: gi|29662742|gb|CB659017.1|CB659017
EST:     GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG                         GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: gi|86527492|gb|CI167698.1|CI167698
EST:     CCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG                         GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: CCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: gi|31818552|gb|CD645551.1|CD645551
EST:     GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG                         GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: gi|29640574|gb|CB645583.1|CB645583
EST:     GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG                         GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: gi|29655805|gb|CB652080.1|CB652080
EST:     GCCTGACATGCCGATCATGTATGGTAGTGATGCTTTTCTATCACTAACAG                         GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: gi|14571448|gb|BI118816.1|BI118816
EST:     GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG                         GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: gi|38474285|gb|CF958417.1|CF958417
EST:     GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG                         GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: gi|88228766|gb|CI228246.1|CI228246
EST:     GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG                         GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: gi|29660961|gb|CB657236.1|CB657236
EST:     GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG                         GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: gi|29638115|gb|CB643124.1|CB643124
EST:     GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG                         GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC