1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGATTCTAAGAATGTGTCTGCTCGACCACCCTGCCATTCTGGAAAGATCGCACTTCAACTGTTCCCAATAGATGAGGAGTTTCAGAAGTCCCTGCAGCAGgtgattacttcagcttttgcaagatttctatgtgtgattattgtatacgacctcgttcagattccataatgtgtggcttgctctgtataattaacag
species | Oryza sativa |
transcript | LOC_Os01g08680.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CACTTCAACTGTTCCCAATAGATGAGGAGTTTCAGAAGTCCCTGCAGCAG AAAAACCACAATCCTTACCTGGAATTGACTGTGGCTCCTCGAAAGAAAATAEST: gi|27545602|gb|CA763814.2|CA763814
genomic: CACTTCAACTGTTCCCAATAGATGAGGAGTTTCAGAAGTCCCTGCAGCAGgtgattactt ... taattaacagAAAAACCACAATCCTTACCTGGAATTGACTGTGGCTCCTCGAAAGAAAATA
EST: CACTTCAACTGTTCCCAATAGATGAGGAGTTTCAGAAGTCCCTGCAGCAG AAAAACCACAATCCTTACCTGGAATTGACTGTGGCTCCTCGAAAGAAAATAEST: gi|66924703|gb|CX111551.1|CX111551
genomic: CACTTCAACTGTTCCCAATAGATGAGGAGTTTCAGAAGTCCCTGCAGCAGgtgattactt ... taattaacagAAAAACCACAATCCTTACCTGGAATTGACTGTGGCTCCTCGAAAGAAAATA
EST: CACTTCAACTGTTCCCAATAGATGAGGAGTTTCAGAAGTCCCTGCAGCAG AAAAACCACAATCCTTACCTG
genomic: CACTTCAACTGTTCCCAATAGATGAGGAGTTTCAGAAGTCCCTGCAGCAGgtgattactt ... taattaacagAAAAACCACAATCCTTACCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTCTAAGAATGTGTCTGCTCGACCACCCTGCCATTCTGGAAAGATCGCACTTCAACTGTTCCCAATAGATGAGGAGTTTCAGAAGTCCCTGCAGCAGgtgattacttcagcttttgcaagatttctatgtgtgattattgtatacgacctcgttcagattccataatgtgtggcttgctctgtataattaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG