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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGAGTACGTGCCGACGTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctcttctttgatttcttgccaaccttttccttttccccttgattcattcatcacttggttgtgaaattcgtgttccagtgccagatcttagtat...

Basic information

species Oryza sativa
transcript LOC_Os01g08320.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g08320.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G004696_T01 (Zea mays), 5'ss of exon 3
ACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGAGTACGTGCCGACGTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctcttctttgatttcttgccaaccttttccttttccccttgattcattcatcacttggttgtgaaattcgtgttccagtgccagat-cttagtat---
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   | || || ||  | |      |||| ||||| |      | | |       |   || |  | ||  | |  |      || | || ||  |   
ACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGAGTACGTACCCACGTACGAGGACAAGGATGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagc---tcctctgcttcttcgttc-tgttttacttttactacgagtacgtggtcttatatattctttacttgatataactcgaatagtttctcagcgtatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86434313|gb|CI094656.1|CI094656
EST:     GACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: GACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|87026433|gb|CI252387.1|CI252387
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCACCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88215704|gb|CI215553.1|CI215553
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86526065|gb|CI166271.1|CI166271
EST:     GCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: GCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88242594|gb|CI242443.1|CI242443
EST:     TACGAGGACAAGGACGGTGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|94362956|gb|CI053117.1|CI053117
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCACTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86542731|gb|CI182937.1|CI182937
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86529312|gb|CI169518.1|CI169518
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86417085|gb|CI031294.1|CI031294
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86417843|gb|CI032052.1|CI032052
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|22307664|gb|BQ908886.1|BQ908886
EST:     ACGAGGACACAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: ACGAGGACA-AGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88476493|gb|CI413764.1|CI413764
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86542617|gb|CI182823.1|CI182823
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTAGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88847243|gb|CI011186.1|CI011186
EST:     ACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGG
genomic: ACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGT-CCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGG
EST: gi|87031528|gb|CI263901.1|CI263901
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88202671|gb|CI201026.1|CI201026
EST:     ATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: ATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88955604|gb|CI091893.1|CI091893
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTNGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88207580|gb|CI207429.1|CI207429
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88850081|gb|CI091376.1|CI091376
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86531401|gb|CI171607.1|CI171607
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88849381|gb|CI089289.1|CI089289
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|8251151|gb|AU091289.1|AU091289
EST:     ACGAGGACAAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCNTGGAA                         GATGTTTGTGGAAACTTGCCAGCG-CTTCGTCTCATGAAAAGCTCAGAGGC
genomic: ACGAGGAC-AAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86512640|gb|CI155273.1|CI155273
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|15849694|gb|BI797970.1|BI797970
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|89170448|gb|CI039725.1|CI039725
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88845667|gb|CI008664.1|CI008664
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88205398|gb|CI204784.1|CI204784
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88242921|gb|CI240772.1|CI240772
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCTGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86526139|gb|CI166345.1|CI166345
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88966146|gb|CI013022.1|CI013022
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88257775|gb|CI360361.1|CI360361
EST:     GGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: GGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86424642|gb|CI063403.1|CI063403
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88237189|gb|CI237038.1|CI237038
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86593437|gb|CI264316.1|CI264316
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|87014717|gb|CI269424.1|CI269424
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88244233|gb|CI243355.1|CI243355
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86252743|gb|CI010225.1|CI010225
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86493004|gb|CI135637.1|CI135637
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88965378|gb|CI011629.1|CI011629
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|15008690|gb|AU223078.1|AU223078
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTNGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86522134|gb|CI162340.1|CI162340
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCCCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|87013760|gb|CI269259.1|CI269259
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|87014558|gb|CI284070.1|CI284070
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|87032648|gb|CI266288.1|CI266288
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|29685212|gb|CB681487.1|CB681487
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|87032450|gb|CI264231.1|CI264231
EST:     CGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: CGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86527896|gb|CI168102.1|CI168102
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86526790|gb|CI166996.1|CI166996
EST:     CGACTGGATGCTCGTCGGCGACGTCCGCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: CGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|89176809|gb|CI013382.1|CI013382
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGTTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|87013252|gb|CI265350.1|CI265350
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88975839|gb|CI024090.1|CI024090
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86823312|gb|CI256318.1|CI256318
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86824408|gb|CI262940.1|CI262940
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88242343|gb|CI242192.1|CI242192
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88205307|gb|CI204693.1|CI204693
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86512596|gb|CI155229.1|CI155229
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88836932|gb|CI008368.1|CI008368
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|88517949|gb|CI445603.1|CI445603
EST:     CGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCCCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: CGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|86507819|gb|CI150452.1|CI150452
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
EST: gi|87020583|gb|CI263446.1|CI263446
EST:     TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAA                         GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC
genomic: TACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 32

ACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGAGTACGTGCCGACGTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctct ... ggttgtgcagGATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGAGAGGAAGCTGGTGGACGCGGTGAACGGGACGGAGTACGTGCCGACGTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGCGACGTCCCCTGGAAgtgagcctcttctttgatttcttgccaaccttttccttttccccttgattcattcatcacttggttgtgaaattcgtgttccagtgccagatcttagtat

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