1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTCAAGTTCAACACGAGTAGCTGCTGATCCTGATACACATCAAGATTTCCAGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAGgtattaacatttataaatggatttttggaatatttaaattgatgagatgagcttattttctagaaaggctaggcatatcttaaatgtttcattttgtgtttctgccatttgttaatgctacaacacaatcattgggcag
species | Oryza sativa |
transcript | LOC_Os01g07950.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAG GATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|86595567|gb|CI264664.1|CI264664
genomic: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAGgtattaacat ... cattgggcagGATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: TTTGATGACATTGTTGCTCAG GATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|88352871|gb|CI678899.1|CI678899
genomic: TTTGATGACATTGTTGCTCAGgtattaacat ... cattgggcagGATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAG GATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTEST: gi|88199623|gb|CI199473.1|CI199473
genomic: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAGgtattaacat ... cattgggcagGATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGT
EST: CTTTTGATGACATTGTTGCTCAG GATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGG-TTTCCTGAGTCTEST: gi|88448599|gb|CI693990.1|CI693990
genomic: CTTTTGATGACATTGTTGCTCAGgtattaacat ... cattgggcagGATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAG GATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|86545203|gb|CI185409.1|CI185409
genomic: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAGgtattaacat ... cattgggcagGATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: TGATGACATTGTTGCTCAG GATATCAAAGAGAACCCAGTCTTGATCTACATGAAGAGTTTTCCTGAGTCTEST: gi|88371997|gb|CI681514.1|CI681514
genomic: TGATGACATTGTTGCTCAGgtattaacat ... cattgggcagGATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAG GATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|87006043|gb|CI289460.1|CI289460
genomic: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAGgtattaacat ... cattgggcagGATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAG GATATCAAAGAGAAACCAGTCTTGATCTACATGAAGGGEST: gi|88367351|gb|CI566317.1|CI566317
genomic: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAGgtattaacat ... cattgggcagGATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGG
EST: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAG GATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|88331903|gb|CI642128.1|CI642128
genomic: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAGgtattaacat ... cattgggcagGATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAG GATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGEST: gi|88327320|gb|CI645097.1|CI645097
genomic: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAGgtattaacat ... cattgggcagGATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGG
EST: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAG GATATCAAAGAGAACCCACTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|33660934|gb|CF291901.1|CF291901
genomic: AGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAGgtattaacat ... cattgggcagGATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAG GATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
genomic: AAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAGgtattaacat ... cattgggcagGATATCAAAGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAAGTTCAACACGAGTAGCTGCTGATCCTGATACACATCAAGATTTCCAGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAGgtattaacatttataaatggatttttggaatatttaaattgatgagatgagcttattttctagaaaggctaggcatatcttaaatgtttcattttgtgtttctgccatttgttaatgctacaacacaatcattgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA