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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTATGTCTTACAGGAGGGAAAGAAATCAATAATGCGATCATGAGCAGTATACAGGACTTGGCAAAATCATTCTCAAATTACCATGATGAAGTCCTGgtacattttgggttgtctcttgcacttttattctatgctgagtattgaatcagtggatggataaatataacatgtaactctttgcaaaaattcattcctg...

Basic information

species Oryza sativa
transcript LOC_Os01g06270.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g06270.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G102196_T02 (Zea mays), 5'ss of exon 1
---CCTATGTCTTACAGGAGGGAAAGAAATCAATAATGCGATCATGAGCAGTATACAGGACTTGGCAAAATCATTCTCAAATTACCATGATGAAGTCCTGgtacattt-tgggttgtctcttgcacttttattctatgctgagtattgaatcagtggatggataaatataacatgtaactctttgcaaa--aattcattcctg-
     ||||||||||||| || |||||| | |||||||| ||  ||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||  | |    |||||||  || |   ||||    |||| | |  | |   | |   |||   || ||    | | | | ||  | |   | |   | | || 
CAGAATATGTCTTACAGGGGGCAAAGAAGTTAATAATGCTATAGTGAGCAGTATACAGGACCTGGCAAAGTCATTCTCAAATTACCATGATGAGGTCCTGgtatgtctgccagttgtctgatgtaaacttata--gtgctaaattatcatgtaatacttggcgcaaaatg--ttctgattattcaccagttattatgtacttgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58673956|gb|CK062642.1|CK062642
EST:     GTATACAGGACTTGGCAAAATCATTCTCAAATTACCATGATGAAGTCCTG                         GTGAAACGTGAAGAGTTGCTTCAGTTTACCCAAAGTGCCATTTCTGGACTA
genomic: GTATACAGGACTTGGCAAAATCATTCTCAAATTACCATGATGAAGTCCTGgtacattttg ... acacatgaagGTGAAACGTGAAGAGTTGCTTCAGTTTACCCAAAGTGCCATTTCTGGACTA