1 5' 3' | 2 5' 3' | 3 5' 3' |
CAACATTGCCACACAGACTGTGGCAGGTTACATCTTCCTTGTTGTGGCAGCGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacggtttcttttttctcctgcgctgaagtgctgaacaatgttatcattgcacagatttactgatatttcttattttgcag
species | Oryza sativa |
transcript | LOC_Os01g05670.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|88838484|gb|CI375032.1|CI375032
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|88448930|gb|CI558002.1|CI558002
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|88264363|gb|CI368137.1|CI368137
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|88409017|gb|CI556725.1|CI556725
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|88217260|gb|CI217109.1|CI217109
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|58596202|gb|CK006730.1|CK006730
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGEST: gi|38565884|gb|CK085337.1|CK085337
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGG
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|86493307|gb|CI135940.1|CI135940
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|88277995|gb|CI398797.1|CI398797
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAN TTGTTCGATGGCAAGGAAGGGAGGGCCGAAGTATCCTCGGCGATGGGTGATEST: gi|29686575|gb|CB682850.1|CB682850
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGA-GGCCGAAGTATCCTCGGCGATGGGTGAT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|88465656|gb|CI522407.1|CI522407
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAN TTGTTCGATGGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATEST: gi|86535695|gb|CI175901.1|CI175901
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGAT-GGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGAT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|86868360|gb|CI321670.1|CI321670
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: TCATGACCAACTGGGCACTTGG-AAGCACCCCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGAGAGGCCGAAGTATCCTCGGCGATGGGGTGATEST: gi|29688041|gb|CB684316.1|CB684316
genomic: TCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGAT-GGGTGAT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|88289581|gb|CI522714.1|CI522714
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|27578144|gb|CB000839.1|CB000839
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|12405077|gb|AU166678.1|AU166678
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: GAAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|86256425|gb|CI061188.1|CI061188
genomic: G-AGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|88830451|gb|CI010651.1|CI010651
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|86251148|gb|CI055281.1|CI055281
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAAGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|88375921|gb|CI528225.1|CI528225
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCCCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|66924234|gb|CX111082.1|CX111082
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|87011468|gb|CI279377.1|CI279377
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|88966120|gb|CI012996.1|CI012996
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|88253275|gb|CI351901.1|CI351901
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|88256534|gb|CI358922.1|CI358922
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|88474410|gb|CI411681.1|CI411681
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCCCCGTTTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|58666456|gb|CK055142.1|CK055142
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|33653574|gb|CF276188.1|CF276188
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|33655192|gb|CF277806.1|CF277806
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|27576649|gb|CA999343.1|CA999343
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|29684478|gb|CB680753.1|CB680753
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|29688042|gb|CB684317.1|CB684317
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTEST: gi|86536046|gb|CI176252.1|CI176252
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
EST: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAG TTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
genomic: CGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacgg ... tattttgcagTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACATTGCCACACAGACTGTGGCAGGTTACATCTTCCTTGTTGTGGCAGCGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGgcaagcacggtttcttttttctcctgcgctgaagtgctgaacaatgttatcattgcacagatttactgatatttcttattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG