1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAGgtatagatctcatctttgcttgcttatttccctccttgctttgattgtccactaccctatgttatagtttccttaaacaaggggtttgcagcagttgcag...
species | Oryza sativa |
transcript | LOC_Os01g05510.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAG CTGAGCCAAAACTGATGGCCGATGATCCCCTGTCATCACATGAGAAACATAEST: gi|58596595|gb|CK007123.1|CK007123
genomic: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAGgtatagatct ... tgaattgcagCTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
EST: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAG CTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATAEST: gi|88400319|gb|CI591009.1|CI591009
genomic: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAGgtatagatct ... tgaattgcagCTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
EST: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAG CTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATAEST: gi|58689352|gb|CK078039.1|CK078039
genomic: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAGgtatagatct ... tgaattgcagCTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
EST: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAG CTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATAEST: gi|58667230|gb|CK055916.1|CK055916
genomic: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAGgtatagatct ... tgaattgcagCTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
EST: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAG CTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATAEST: gi|117246389|gb|CT843250.1|CT843250
genomic: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAGgtatagatct ... tgaattgcagCTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
EST: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAG CTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
genomic: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAGgtatagatct ... tgaattgcagCTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAGgtatagatctcatctttgcttgcttatttccctccttgctttgattgtccactaccctatgttatagtttccttaaacaaggggtttgcagcagttgcag
- - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA