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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTTCGCTCCTCCATTTAGCCGGTTTGTTGGGAAGGATATGATGACTTATGTTAGTTACCCGGTGAAACAAAGCACTGTACCAGCATGGGGTGTTCCTgtatgtatccgaacctctgcatttccatttccttatacaaactcaatacacacattcatcgctgatattggatacccggtcctcttggcag

Basic information

species Oryza sativa
transcript LOC_Os01g04660.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g04660.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G174343_T05 (Zea mays), 5'ss of exon 2
GCATTTCGCTCCTCCATTTAGCCGGTTTGTTGGGAAGGATATGATGACTTATGTTAGTTACCCGGTGAAACAAAGCACTGTACCAGCATGGGGTGTTCCTgtatgtatccgaacc----tctgcatttccatttccttatacaaactc-aatacacac-attcatcgctgatattggatacccggtcctcttggcag
||||| |||||| || || || || ||||| |||||||||||||||||| || |||| ||||||||||||| |||||| ||||||||||||| ||| ||||||||| || ||||      || || |||  ||  || || ||| ||| ||  ||| | ||||| | ||||| | ||     ||  ||| |||  ||
GCATTACGCTCCCCCGTTCAGTCGATTTGTCGGGAAGGATATGATGACTGATATTAGGTACCCGGTGAAACCAAGCACAGTACCAGCATGGGCTGTCCCTgtatgtttctgaacagtagcctccaattctgttgtctgatgcaagctcgaactcactctattcagcactgatgtggggcgttcga-ccttttgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218479708|gb|FG950881.1|FG950881
EST:     ATGTTAGTTACCCGGTGAAACAAAGCACTGTACCAGCATGGGGTGTACCT                         ATAATTTCCATAGTTTGCCCTGTAATTATCTTTCTATCCGTTTATATCAGC
genomic: ATGTTAGTTACCCGGTGAAACAAAGCACTGTACCAGCATGGGGTGTTCCTgtatgtatcc ... ctcttggcagATAATATCCATAGTTTGCCCTGTAATTATCTTTCTATCCGTTTATATC-GC
EST: gi|218497722|gb|FG949370.1|FG949370
EST:     ATGTTAGTTACCCGGTGAAACAAAGCACTGTACCAGCATGGGGTGTTCCT                         ATAATTTCCATAGTTTGCCCTGTAATTATCTTTCTATCCGTTTATATCGCT
genomic: ATGTTAGTTACCCGGTGAAACAAAGCACTGTACCAGCATGGGGTGTTCCTgtatgtatcc ... ctcttggcagATAATATCCATAGTTTGCCCTGTAATTATCTTTCTATCCGTTTATATCGCT