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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTATGCATCGGCCGACAATAACCCAGGTTTTAGATATGTTCGAGAGAAGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagatactttctctacacattatgatttggactggtaatattttcagtgaatttcatctatgctatttctgtttttcag

Basic information

species Oryza sativa
transcript LOC_Os01g04570.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29626544|gb|CB631555.1|CB631555
EST:     AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACT                         AGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAA
genomic: AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagatact ... tgtttttcagAGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAA
EST: gi|88252659|gb|CI351087.1|CI351087
EST:     AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACT                         AGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAA
genomic: AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagatact ... tgtttttcagAGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAA
EST: gi|86861609|gb|CI329448.1|CI329448
EST:     AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACT                         AGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAA
genomic: AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagatact ... tgtttttcagAGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAA
EST: gi|29630493|gb|CB635502.1|CB635502
EST:     AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACT                         AGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAA
genomic: AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagatact ... tgtttttcagAGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAA