1 5' 3' | 2 5' 3' | 3 5' 3' |
GTACATGACGACGATCGTCGTCAAGTTCTTCATGGTCGACAGCGGCAAGCCGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcgacacttaattaactttctctgccacttaataatgtcttaattactattccctccatcccaaattataaggtctatattttttttacatgg...
species | Oryza sativa |
transcript | LOC_Os01g03530.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCAC ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAAEST: gi|89163572|gb|CI100462.1|CI100462
genomic: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST: CGTACCCGTTCGACGCCACGGCCGAGCCAGGGTACGTCTATGACTGCCAC ATTCTGGGTCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAAEST: gi|88456565|gb|CI547281.1|CI547281
genomic: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST: CCCGGCTACGTCTATCACTGCCAC ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAAEST: gi|88249151|gb|CI249000.1|CI249000
genomic: CCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCAC ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAAEST: gi|88383134|gb|CI538162.1|CI538162
genomic: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST: GGCCGAGCCCGGGTACGTCTATCACTGCCAC ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAAEST: gi|88232947|gb|CI232796.1|CI232796
genomic: GGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCAC ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAACTGATCAAAEST: gi|88246331|gb|CI246180.1|CI246180
genomic: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCAC ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
genomic: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACATGACGACGATCGTCGTCAAGTTCTTCATGGTCGACAGCGGCAAGCCGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcgacacttaattaactttctctgccacttaataatgtcttaattactattccctccatcccaaattataaggtctatattttttttacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccctcc