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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttgcttctcatttgatgaaatgaggctactgacacatccatgctctaattctgatatgttacag

Basic information

species Oryza sativa
transcript LOC_Os01g01060.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G078985_T01 (Zea mays), 5'ss of exon 3
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttgcttctcatttgatgaaatgaggctactgacacatccatgctct-aattctgatatgttacag---------------
|||||||||| ||||||||||| || || ||||||||||| |||||||||||||||||||| |||||| | ||||| || ||||||||||| ||||||||||| || |  | | ||     ||     |  | |  |  |  |||   | | | |||| || |   | |  |               
TCACCACTGGTGCCAGGGAGAGCGCTTTCAGGAACATCAAAACCATTGCTGAGTGCCTTGCAGATGAGTTGATCAACGCTGCCAAGGGCTCTTCCAACAGgtatatatatcctgtctggctatatttggttgtttttttcctatctgcgatgtgaattgtgctcattcatggcaattcttgtcacag

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G156673_T03 (Zea mays), 5'ss of exon 2
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaat------cttgcttctcatttgatgaaatgaggctac---tgacacatccatgctctaattc-tgata-----tgttacag
|||||||||| |||||||||||||| ||  |||||||||| |||||||| ||||||||||| |||||||| ||||| || ||||||||||||||||||||||| ||      | || ||     |||   |  || |  | |    ||        || ||| |||| ||  |     ||||||||
TCACCACTGGTGCCAGGGAGAGTGCTTTCCGGAACATCAAAACCATTGCCGAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtacatatgttgcctgtttgcttcttgtctatctgtgattccgcacgatgtgaaattgttctcattcgtgccaattcttgttacag

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA09G15680.2 (Glycine max), 5'ss of exon 3
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatctt---gcttctcatttgatgaaatgagg--ctactgacacatccatgctctaattctgatatgttacag-----------------------
| || || || ||  ||||   ||| || || ||||||||||| |||||||| ||| | |||||||| || || ||||| || || || |||||||||||||| |  ||    | |  |  || |||   ||      | ||||   |    || | |  || |  |  |||                           
TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttttaacattcctattcatggtgtgtacattttctgatgtaattttgattttttttttgttggttttgctgaatgacattactgtatttcag

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT2G37270.1 (Arabidopsis thaliana), 5'ss of exon 4
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaa-------------atcttgcttctcatttgatgaaatgaggctactgacacatccatgctctaattctgatatgttacag----------
| || ||||| ||  | ||   ||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| || ||||| || ||||||||||||             |  | |  | ||  ||||||   | |   || ||  |  |   |   |||||  |   || ||              
TTACAACTGGTGCACGTGAAGCTGCCTTTAGAAACATCAAGACAATCGCTGAGTGCCTTGCTGATGAACTCATCAATGCTGCAAAGGGATCTTCCAACAGgtaagaacactctatctacatagtctgtctcttgatggcttcactttattgttagttagttaagctaataatagcatcttctcttgtcttgcag

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaat---ctt-------gcttctcatttgatgaaatgaggctactgacacatccatgctctaattctgatatgttacag
| |||||||| ||  | ||   ||| || || ||||||||||| || ||||||||||||||||||||  | ||||| || ||||||||||| ||||||||||||||   |||        |||| |  ||| | | || |   ||  |  |     ||| |  || | | || | || |||
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgtaaatacacttccaaatgacttcactattgttcatataac-ttaaagtgaagctaatgattgaactgttatgtcttgcag

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv04s0043g00440.t01 (Vitis vinifera), 5'ss of exon 4
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttgcttc-------tcatttgatgaaatgaggctactgacacatccatgctctaattctgatatgttacag------------------------------------------------------
|||| ||||| ||  | |||  ||| || |||||||||||||| || ||||| ||| | || ||||| ||||| || || || ||||| ||||||||||||||||   |   |        ||  ||||  ||   |    |||||  | ||  || | | | |  | | |||| |                                                        
TCACTACTGGTGCTCGCGAGTCTGCATTCAGGAACATCAAGACAATAGCTGAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagatagcttagatatatctcttgaaaaatatattgcactgattc-tctctgtttttagtgagttctgttccctattctggtcttataatatgttggctgactgtgttatattacatgtatatctcag

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv08s0007g07220.t01 (Vitis vinifera), 5'ss of exon 4
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttgcttctcatttgatgaaatgaggctactgacacatccatgctctaattctgatatgttacag---------------
|||| || || ||| | ||   ||| || |||||||| ||||| || ||||| ||  | |||||||| ||||||||||| || || || |||||||||||||| |    |   | |||||       | |  | | | |  || |  || |||  | || |    || ||                
TCACTACCGGAGCCCGAGAATCTGCTTTCAGGAACATAAAGACAATAGCTGAATGTTTGGCTGATGAACTCATCAATGCTGCAAAAGGTTCATCCAACAGgtacaaaaaggcccacattt-------ttataccatttattcacctctgttctc-tgctaaccgtttgcaattatcggcatttcag

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EDP01658 (Chlamydomonas reinhardtii), 5'ss of exon 6
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaat-cttgctt-ctcatttgatgaaatgaggctactgacacatccatgctctaattctgatatgttacag-------------------------------
  |||||||||||| | |||   |||||  | ||||||||||||||||| |||||||| ||||| |||||  | || || ||||||||||| ||||||||||     | ||| | ||     ||||   |  |  |   ||  |  |   |  |    |  |    |   |||                               
--ACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATCAAGACCATTGCGGAGTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgcgtactagcacgatgggctaggattg--gaggcgccagaggccgccgtgaggcgggcggcagtggtgccgggttggtcaggcatccaagaaaa

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S101_208V6.1 (Physcomitrella patens), 5'ss of exon 3
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttgcttctcatttgatgaaatgaggctactga-cacatc-catgctctaattctgatatgttacag--------------------------------------------------------------------------
| || ||||| ||| | |||   ||||| |||||||||||||| ||||| |||||| | ||||| ||| | |||||||| || ||||| || || |||||||   |  ||    ||   ||||    || |  |   || ||  |  | || | | ||  |    |  |||                                                                            
TGACAACTGGTGCCCGAGAGTCCGCCTTCAGGAACATCAAGACGATTGCGGAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtgt---tcgactgatagtgtgtgcgtgtggagcatttttcgtgttgtcataatcgggtaatacgctcttggtgtttctgttatttgattcagtggtgactttgtcacggaggctaatttggtattgtttgtggtaacag

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgta----------------aatcttg-----cttctcatttgatgaaat-gaggctactgacacatccatgctctaattc--------tgatatgttacag
|||||||||||||  | |||  ||| ||||| |||||||||||||||||||||||| | ||||||||| | || || || |||||||| || || ||||||||                | ||||       | ||  ||   || |   ||   |  |  |  | || |  ||| | |         |  | | ||||||
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatttacttgttctttggagcagaaattgttatcctaccctttttctgacttgtgggtaattcttttttacag

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ17708 (Selaginella moellendorffii), 5'ss of exon 4
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttgcttctcatttgatgaaatgaggctactgacacatccatgctctaattctgatatgttacag
|||| ||||| ||  | |||||||| ||  | |||||||||||||| || |||||||||||||| |||||||| |||||||||||||| || |||||||||||  ||  |      | ||  |    |   ||  |   | |     | |  |  || |||| | | |   
TCACTACTGGAGCTCGCGAGAGTGCTTTCCGAAACATCAAGACCATCGCCGAGTGCCTTGCTGACGAGCTCATGAATGCCGCCAAGGGATCTTCCAACAGgtacctcgcggccagaaattcttcctct--cgcctcaagctctaaagttccttgtttttgatgtttcag--

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ16239 (Selaginella moellendorffii), 5'ss of exon 4
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttgctt-----ctcatttgatgaaatgaggctactgacacatccatgctctaattctgatatgttacag
|||| ||||| ||  | |||||||| ||  | |||||||||||||| || |||||||| ||||| |||||||| |||||||||||||| || |||||||||||  |   |         || ||   |    | | ||| || | |  ||| || | |  || |   ||||| |||
TCACTACTGGAGCTCGCGAGAGTGCTTTCCGAAACATCAAGACCATCGCCGAGTGCCTCGCTGACGAGCTCATGAATGCCGCCAAGGGATCTTCCAACAGgtaccttgcggccagaaattctttctctcgcctcaagct-ctaa-agttccttgtttttgtttttg-atgtttcag

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ37091 (Selaginella moellendorffii), 5'ss of exon 4
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttgcttctcatttgatgaaatgaggctactgacacatccatgctctaattctgatatgttacag
|||||||||| ||  | |||||||| ||  | |||||||||||||| || |||||||||||||| ||||| || ||||| || ||||| || |||||||||||  || | | |     | | | |      |  |   ||  |    | ||    | ||  | ||   |||
TCACCACTGGAGCTCGCGAGAGTGCTTTCCGTAACATCAAGACCATCGCCGAGTGCCTTGCTGACGAGCTGATGAATGCTGCAAAGGGATCGTCCAACAGgtacttcctacattgttctagctcatgctttgaaagaaactaagagctccttctgtgcttgtttgcatcag

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ18003 (Selaginella moellendorffii), 5'ss of exon 4
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttgcttctcatttgatgaaatgaggctactgacacatccatgctctaattctgatatgttacag
|||||||||| ||  | |||||||| ||  | |||||||||||||| || |||||||||||||| ||||| || ||||| || ||||| || |||||||||||  || | | |     | | | |      |  |   ||  |      ||    | ||  | ||   |||
TCACCACTGGAGCTCGCGAGAGTGCTTTCCGTAACATCAAGACCATCGCCGAGTGCCTTGCTGACGAGCTGATGAATGCTGCAAAGGGATCGTCCAACAGgtacttcctacattgttctagctcatgctttgaaagaaactaagagccccttctgtgcttgtttgcatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58678717|gb|CK067404.1|CK067404
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|94362156|gb|CI052473.1|CI052473
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|86524798|gb|CI165004.1|CI165004
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|33656960|gb|CF279574.1|CF279574
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCA
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|86509223|gb|CI151856.1|CI151856
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|33808604|gb|CF330188.1|CF330188
EST:     GATTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAG
EST: gi|88661036|gb|CI449343.1|CI449343
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|86537429|gb|CI177635.1|CI177635
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|86527571|gb|CI167777.1|CI167777
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|88204808|gb|CI202659.1|CI202659
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|86527351|gb|CI167557.1|CI167557
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|88304420|gb|CI518076.1|CI518076
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAANAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|313080784|gb|HO213581.1|HO213581
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|88264694|gb|CI368468.1|CI368468
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|58690682|gb|CK079369.1|CK079369
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|88242758|gb|CI242607.1|CI242607
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|11173123|gb|AU164624.1|AU164624
EST:     GAGTGCCTTGCTNATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|88481807|gb|CI419078.1|CI419078
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATTCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACC
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCA-TCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACC
EST: gi|88211131|gb|CI212564.1|CI212564
EST:     GAGTGCCTTGCTGGTGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|86523283|gb|CI163489.1|CI163489
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|33807696|gb|CF329740.1|CF329740
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|25806933|gb|CA762894.1|CA762894
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|86598408|gb|CI355025.1|CI355025
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|88323058|gb|CI548152.1|CI548152
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|88469581|gb|CI406852.1|CI406852
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|86862392|gb|CI345504.1|CI345504
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|33813590|gb|CF332679.1|CF332679
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|88985939|gb|CI033268.1|CI033268
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|7332366|gb|AU085712.1|AU085712
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|88272788|gb|CI386643.1|CI386643
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|163922806|gb|EG712227.1|EG712227
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCC
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCC
EST: gi|33661090|gb|CF292057.1|CF292057
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|88965610|gb|CI011748.1|CI011748
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|88838505|gb|CI375053.1|CI375053
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|88663736|gb|CI485732.1|CI485732
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|14191937|gb|AU184148.1|AU184148
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|27921122|gb|CB096930.1|CB096930
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGNCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|15852452|gb|BI805248.1|BI805248
EST:     TGCCTTGCTGATGAGCTCATCAATGGCCGCACAAGGGCTCATCCATACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACC
genomic: TGCCTTGCTGATGAGCTCATCAAT-GCCGC-CAAGGGCTCATCCA-ACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACC
EST: gi|33656959|gb|CF279573.1|CF279573
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAG
EST: gi|33664685|gb|CF295652.1|CF295652
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
EST: gi|38476792|gb|CF960925.1|CF960925
EST:     GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG
genomic: GAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 102

TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttg ... tatgttacagCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCGTTGAGTGCTGAACCCATCTCAGTGTGCTCGAGCTATTGCCTTGCACTGT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttgcttctcatttgatgaaatgaggctactgacacatccatgctctaattctgatatgttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA