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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTCCCTCCTTGAAGGGATCCACTTTTCCTCAGAAGGTTCCATATGTTATTTTCTGTGCTCCCCCATCTCGTTCGGATGATTACCCTGGGGATGTGAGgtaaatgagtacgattataatgatgaatccatgattatattactgttaacagtatcatcctaccttctggtatcatgtgagttcctaatggctaaggtcc...

Basic information

species Oryza sativa
transcript 13113.m00234
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: 13113.m00225 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G017853_T01 (Zea mays), 5'ss of exon 3
TCATTCCCTCCTTGAAGGGATCCACTTTTCCTCAGAAGGTTCCATATGTTATTTTCTGTGCTCCCCCATCTCGTTCGGATGATTACCCTGGGGATGTGAGgtaaatgagtacgattataatgatgaatccatgattatattactgttaacagtatcatcctaccttctggtatcatgtgagttcctaatggctaaggtcc---
|||| ||||| ||||| ||  ||||| ||| ||||||||||||| ||||||||||||| |||||||| ||| |||| |||||||||||| ||||||| |||||||||| | | ||   |||||||| | ||| | | |||| |  ||     |    | | |  || | | |   |||    | ||||||   | |||     
TCATCCCCTCATTGAAAGGCACCACTATTCATCAGAAGGTTCCACATGTTATTTTCTGCGCTCCCCCGTCTGGTTCAGATGATTACCCTAGGGATGTCAGgtaaatgactgcaatgggaatgatgatttcatcaatgtatttcaatt---tttccagtgccatattttagcactttgttcacttctaatgataatggtatgac