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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAGATTGGCTGTCCCTGATAGCTGTCCATAGTGATTCATGGTTACTGTCTGTGGCATTTTACTTTGGGGCTCGTTTTGGATTTGATAAAAAGGCCAGgtttgcttctaattcatttttttccctgttgatttgcatcaccttttctcaaactggtcattttaattctatctgttctatcactttactaaagaattcn...

Basic information

species Oryza sativa
transcript 13113.m00233
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: 13113.m00233 (Oryza sativa), 5'ss of exon 3
lower sequence: AT2G02470.1 (Arabidopsis thaliana), 5'ss of exon 3
AAAAAGATTGGCTGTCCCTGATAGCTGTCCATAGTGATTCATGGTTACTGTCTGTGGCATTTTACTTTGGGGCTCGTTTTGGATTTGATAAAAAGGCCAGgtttgcttctaattcatttttttccctgttgatt--tgcatcaccttttctcaaactggtcattttaattctatctgttctatcactttactaaagaattcn-
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AAAAGGACTGGGTATCTTTGGTCGCAGTTCACAGTGATTCATGGCTGCTTTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAATGAGAGgtaagggtccttctcaagctcagtgtttttgagtgttgcatc-tcaattatgacaatattgggtgtactc--atgtgtggtaaggttataatgatcattctag