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GTTCCTGAAGAAGAGAAAAATGCTGGTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAGgtatttatatatttagaacctaatgtttcaatactgcttgtagtcatttggtactccctctggtttttaatatacaacacaattgacttcgtcctcaaac...
species | Oryza sativa |
transcript | LOC_Os01g56490.1 |
intron # | 28 |
splice site | 5' |
intron type | U2 |
EST: GTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAG CACATTGATTACTACGGAGAACCTTTCTTCTTTCTTATCCGTGATGGTGAGEST: gi|38483147|gb|CF966949.1|CF966949
genomic: GTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAGgtatttatat ... atctttccagCACATTGATTACTACGGAGAACCTTTCTTCTTTCTTATCCGTGATGGTGAG
EST: GTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAG CACATTGATTACTACGGAGAACCTTTCTTCTTTCTTATCCGTGATGGTGAGEST: gi|58652982|gb|CK041662.1|CK041662
genomic: GTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAGgtatttatat ... atctttccagCACATTGATTACTACGGAGAACCTTTCTTCTTTCTTATCCGTGATGGTGAG
EST: GTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAG CACATTGATTACTACGGAGAACCTTTCTTCTTTCTEST: gi|88324991|gb|CI645005.1|CI645005
genomic: GTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAGgtatttatat ... atctttccagCACATTGATTACTACGGAGAACCTTTCTTCTTTCT
EST: GTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAG CACATTGATTACTACGGAGAACCTTTCTTCTTTCTTATCCGTGATGGTGAGEST: gi|218495798|gb|FG954256.1|FG954256
genomic: GTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAGgtatttatat ... atctttccagCACATTGATTACTACGGAGAACCTTTCTTCTTTCTTATCCGTGATGGTGAG
EST: GTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAG CACATTGATTACTACGGAGAACCTTTCTTCTTTCTTATCCGTGATGGTGAGEST: gi|33810373|gb|CF331077.1|CF331077
genomic: GTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAGgtatttatat ... atctttccagCACATTGATTACTACGGAGAACCTTTCTTCTTTCTTATCCGTGATGGTGAG
EST: GTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAG CACATTGATTACTACGGAGAACCTTTCTTCTTCCTTATCCGTGATGGTGAGEST: gi|2311230|gb|C27385.1|C27385
genomic: GTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAGgtatttatat ... atctttccagCACATTGATTACTACGGAGAACCTTTCTTCTTTCTTATCCGTGATGGTGAG
EST: GTGTGCGAGACCGNTTNGTTCATGTCTGTCACTTCATCATAGANAAACAG CACATTGATTACTACGGAGAACCTTTCTTCTNTCTTATCCGT
genomic: GTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAGgtatttatat ... atctttccagCACATTGATTACTACGGAGAACCTTTCTTCTTTCTTATCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCTGAAGAAGAGAAAAATGCTGGTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAGgtatttatatatttagaacctaatgtttcaatactgcttgtagtcatttggtactccctctggtttttaatatacaacacaattgacttcgtcctcaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctc