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GTCCTCGAAGGGAAGCACAACACCGAAATTGATGATACACTCGCTCAGTATGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgatcacttcattttaacacctttctcttgtgcgatgcttcagagtagcatgtattgtgtgcaatataagtttattacactagtcccagtgtaa...
species | Oryza sativa |
transcript | LOC_Os04g52900.2 |
intron # | 27 |
splice site | 5' |
intron type | U2 |
EST: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTTEST: gi|89198375|gb|CI007435.1|CI007435
genomic: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
EST: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTTEST: gi|12622282|gb|AU172495.1|AU172495
genomic: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
EST: GTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTTEST: gi|58591314|gb|CF989622.1|CF989622
genomic: GTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
EST: TGAGGTTCCTTCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTTEST: gi|29680005|gb|CB676280.1|CB676280
genomic: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
EST: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTTEST: gi|33685919|gb|CF314158.1|CF314158
genomic: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
EST: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTTEST: gi|88975530|gb|CI021612.1|CI021612
genomic: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
EST: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTTEST: gi|88991593|gb|CI019771.1|CI019771
genomic: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
EST: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTTEST: gi|112787004|gb|EE591866.1|EE591866
genomic: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
EST: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATAGGGTCGCAACCGTCTACAGCAACCAAGTTEST: gi|88839337|gb|CI000809.1|CI000809
genomic: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
EST: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTTEST: gi|66924978|gb|CX111826.1|CX111826
genomic: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
EST: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTTEST: gi|88967040|gb|CI392002.1|CI392002
genomic: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
EST: GAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTTEST: gi|88834095|gb|CI077576.1|CI077576
genomic: GAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
EST: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTTEST: gi|58670026|gb|CK058712.1|CK058712
genomic: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
EST: TGAGGTTCCTTCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTTEST: gi|29671481|gb|CB667756.1|CB667756
genomic: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
EST: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTTEST: gi|88845407|gb|CI084332.1|CI084332
genomic: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
EST: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAG GACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
genomic: TGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgat ... tttttttcagGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAACCAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCTCGAAGGGAAGCACAACACCGAAATTGATGATACACTCGCTCAGTATGAGGTTCCATCTGATAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGgtacgttgatcacttcattttaacacctttctcttgtgcgatgcttcagagtagcatgtattgtgtgcaatataagtttattacactagtcccagtgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG