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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTTAGCAGAGGCAGAAAATAGGCCGCTGCCCCAATCATTTTCAAGTAACGATGTCCGTGCCTTACGACTAAGTGATTTCAAACATGCTCATGAACAGgtatgatccataataaataagaacttgctttcaagtactcgtgctgtgatgtacatacatactaccatgatttttcttgttaaatgcctgaatcaagaat...

Basic information

species Oryza sativa
transcript LOC_Os03g22420.1
intron # 27
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g22420.1 (Oryza sativa), 5'ss of exon 27
lower sequence: GRMZM2G168228_T01 (Zea mays), 5'ss of exon 6
AGCTTTAGCAGAGGCAGAAAATAGGCCGCTGCCCCAATCATTTTCAAGTAACGATGTCCGTGCCTTACGACTAAGTGATTTCAAACATGCTCATGAACAGgtatgatccataataaataagaacttgctttcaagtactcgtgctgtgatgtacatacatactacca--tgatttttcttgttaaatgcctgaatcaagaat
||||| |||||| |||||||||||  |  |||| |  |||    | || || ||||||||||| ||| ||  ||||||||||| |||||| |||||||||||||||||    |||| ||  |||||  | |    |       |  |  | |       |  || |   |||  ||  || |||        | |  | |  
AGCTTCAGCAGAAGCAGAAAATAGATCATTGCCTCCGTCACACACTAGCAATGATGTCCGTGCATTAAGAACAAGTGATTTCATACATGCGCATGAACAGgtatgatcttgtataagtattaactttgtcttttatttcgacacactagtttgtgcttcttatatctgttgaaattctttattatgatgtaaactttaca--

upper sequence: LOC_Os03g22420.1 (Oryza sativa), 5'ss of exon 27
lower sequence: GRMZM2G042074_T02 (Zea mays), 5'ss of exon 22
AGCTTTAGCAGAGGCAGAAAATAGGCCGCTGCCCCAATCATTTTCAAGTAACGATGTCCGTGCCTTACGACTAAGTGATTTCAAACATGCTCATGAACAGgtatgatccataataaataagaactt-gctttcaagtactcgtgctgtgatgtacatacatactaccatgatttttcttgttaaatgcctgaatcaagaat
||||| ||||||  |||||||||||||  |||| |  ||     | || || ||||||||||| ||| || |||||||||||| |||||| |||||||||||||||||    |||| ||  ||||| |  ||||  || |    |  |  | |       | | |   |||  ||  || |||      | |       ||
AGCTTCAGCAGAAACAGAAAATAGGCCATTGCCTCTGTCGCACACTAGCAATGATGTCCGTGCATTAAGAATAAGTGATTTCATACATGCGCATGAACAGgtatgatcttatataagtattaacttcggattcatttattttgacactagtttgtccttctgccagt-tgaaattctttattatgatattaacgattacat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33680639|gb|CF308878.1|CF308878
EST:     ACGATGTCCGTGCCTTACGACTAAGTGATTTCAAACATGCTCATGAACAG                         GTCTGTGCAAGTGTGTCTTCGGATTCAACTAACATGAATGAACTTATTCAA
genomic: ACGATGTCCGTGCCTTACGACTAAGTGATTTCAAACATGCTCATGAACAGgtatgatcca ... tttgttatagGTCTGTGCAAGTGTGTCTTCGGATTCAACTAACATGAATGAACTTATTCAA