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AATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAGgttagtttgatttgtcgagattgtgccttctcaatttctaccaagttattgaagaaaaaaaaatctactgagtgaatgtttctggtctatttcatcctag...
species | Oryza sativa |
transcript | LOC_Os07g47530.1 |
intron # | 26 |
splice site | 5' |
intron type | U2 |
EST: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAG GAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCCTCGTTCTEST: gi|86524067|gb|CI164273.1|CI164273
genomic: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAGgttagtttga ... ctacctgcagGAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCCTCGTTCT
EST: ATAAGGGAGATCCTTGAAAGAGAGAAGAAG GAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCCTCGTTCTEST: gi|66914068|gb|CX100916.1|CX100916
genomic: ATAAGGGAGATCCTTGAAAGAGAGAAGAAGgttagtttga ... ctacctgcagGAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCCTCGTTCT
EST: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAG GAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCCNTCGNTTEST: gi|29669557|gb|CB665832.1|CB665832
genomic: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAGgttagtttga ... ctacctgcagGAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCC-TCG-TT
EST: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAG GAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCCTCGTTCTEST: gi|29632466|gb|CB637475.1|CB637475
genomic: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAGgttagtttga ... ctacctgcagGAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCCTCGTTCT
EST: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAG GAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCCTCGTTCTEST: gi|428039|gb|D24187.1|D24187
genomic: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAGgttagtttga ... ctacctgcagGAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCCTCGTTCT
EST: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAG GAGAGAGCATCAGCAGAAGCAGEST: gi|88842684|gb|CI081940.1|CI081940
genomic: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAGgttagtttga ... ctacctgcagGAGAGAGCATCAGCAGAAGCAG
EST: AAAGAGAGAAGAAG GAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCCTCGTTCTEST: gi|58688870|gb|CK077557.1|CK077557
genomic: AAAGAGAGAAGAAGgttagtttga ... ctacctgcagGAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCCTCGTTCT
EST: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAG GAGAGAGCATCAGCAGAAGCAGAAAATEST: gi|29685522|gb|CB681797.1|CB681797
genomic: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAGgttagtttga ... ctacctgcagGAGAGAGCATCAGCAGAAGCAGAAAAT
EST: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAG GAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCCTCGTTTTEST: gi|29632742|gb|CB637751.1|CB637751
genomic: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAGgttagtttga ... ctacctgcagGAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCCTCGTTCT
EST: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAG GAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCCTCGTTCT
genomic: TAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAGgttagtttga ... ctacctgcagGAGAGAGCATCAGCAGAAGCAGAAAATAAACCATTACCTCCCCCTCGTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAGAGAAGAAGgttagtttgatttgtcgagattgtgccttctcaatttctaccaagttattgaagaaaaaaaaatctactgagtgaatgtttctggtctatttcatcctag
- - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa