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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCGATCAGTTTCAACCATCCTGTACCTTGTATCACTTCAAGATCTTACCAACTGCCCCTTTCGGGTCGTTGATGAGATAAATCAAGgcaagccaaccctcacaagtttttgttccctatgcactcaatgctgttataaaatgattactagtttgttgaagcattacaaaggtaactgtttccccgaaattgcag

Basic information

species Oryza sativa
transcript LOC_Os05g51790.2
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51790.2 (Oryza sativa), 5'ss of exon 26
lower sequence: GRMZM2G440916_T01 (Zea mays), 5'ss of exon 26
GAGCGATCAGTTTCAACCATCCTGTACCTTGTATCACTTCAAGATCTTACCAACTGCCCCTTTCGGGTCGTTGATGAGATAAATCAAGgcaagccaaccctcacaagtttttgttccctatgcactcaatgctgttataaaatgattactagtttgttgaagcattacaaaggt---aactgtttccccgaaattgcag
|||||||| || || |||||| |||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||  ||||  | |   | ||   ||| | |           ||||      |||| | |||  ||||  | | |||     |||   |    ||   |||||  |||||
GAGCGATCTGTATCGACCATCTTGTATCTTGTGTCACTTCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAGgtaacacaac--tgaattgcttcatttctcca----------actgt------atgactgctaacttgtataggtattgaggtggtctaatgcattcatccgaatatgcag

upper sequence: LOC_Os05g51790.2 (Oryza sativa), 5'ss of exon 26
lower sequence: GLYMA20G34020.1 (Glycine max), 5'ss of exon 27
GAGCGATCAGTTTCAACCATCCTGTACCTTGTATCACTTCAAGATCTTACCAACTGCCCCTTTCGGGTCGTTGATGAGATAAATCAAGgcaagccaaccctcacaagtttttgttccctatgcactcaatgctgttataaaatgattactagtttgttgaagcattacaaaggtaactgtttccccgaaattgcag
|| || ||||||||||| ||  | || ||||| || |||||||||||||| |||||||| ||| | |||||||||||||| || |||||   |  |    |   |     || || ||  ||    ||   ||  || | | ||  |   | | ||||     || |                             
GAACGCTCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTCGTTGATGAGATCAACCAAGgtgtgttactgtttgaagaaaattctttccattgacaccagctct-ctaaagactgtctttgactgtgtttt--tatcag----------------------------

upper sequence: LOC_Os05g51790.2 (Oryza sativa), 5'ss of exon 26
lower sequence: AT5G15920.1 (Arabidopsis thaliana), 5'ss of exon 2
------------GAGCGATCAGTTTCAACCATCCTGTACCTTGTATCACTTCAAGATCTTACCAACTGCCCCTTTCGGGTCGTTGATGAGATAAATCAAGgcaagccaaccctcacaagtttttgttccctatgcactcaatgctgttataaaatgattactagtttgttgaagcattacaaaggtaactgtttccccgaaattgcag
            ||||| || || ||||| ||||| ||||| || || ||||||||||| || ||||| || ||  |||| ||||||||||| |||||||| ||   ||     | | |||||| ||    ||| |   ||  ||||    |||          || ||  |||  |   |||  ||    ||| |  |    |||||
CAATCTGGAGGAGAGCGTTCTGTCTCAACTATCCTTTACCTCGTCTCTCTTCAAGATCTGACAAACTGTCCTTTCAGGGTTGTTGATGAGATTAATCAAGgtaa---aaagtgtaaatgttttt-tttttaatgta---aaaactgtctcgaaaca--------ttagtcaaagtctcttaaaaatatacatttgcttg----tgcag

upper sequence: LOC_Os05g51790.2 (Oryza sativa), 5'ss of exon 26
lower sequence: Vv13s0064g00180.t01 (Vitis vinifera), 5'ss of exon 26
GAGCGATCAGTTTCAACCATCCTGTACCTTGTATCACTTCAAGATCTTACCAACTGCCCCTTTCGGGTCGTTGATGAGATAAATCAAGgcaagccaaccctcacaagtttttgttccctatgcactcaatgctgttataaaatgattactagtttgttgaagcattacaaaggtaactgtttccccgaaattgcag
||||| |||||| |||| || ||||| ||||| || || |||||||| || |||||||| ||| |||| ||||||||||||||||||||  ||  ||     | | | | || || | |           |   ||  |||||   |||| |  | |  |          |  |   | || |||| |        
GAGCGCTCAGTTGCAACTATTCTGTATCTTGTTTCTCTACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGgtgagttaaaatata-atggtgttattgctt----------cgtcattgcaaaatatatact-gcctttcaagatgacttttattttgtttttccccctag-------

upper sequence: LOC_Os05g51790.2 (Oryza sativa), 5'ss of exon 26
lower sequence: PP1S274_85V6.1 (Physcomitrella patens), 5'ss of exon 27
GAGCGATCAGTTTCAACCATCCTGTACCTTGTATCACTTCAAGATCTTACCAACTGCCCCTTTCGGGTCGTTGATGAGATAAATCAAGgcaagccaaccctcacaagtttttgttccctatgcactcaatgctgttataaaatgat-tactagtttgttgaagcattacaaaggtaactgtt-tccccgaaattgcag
|| || ||||| || || || |||||||| || || ||||||||||| ||  ||||||||||||| || || |||||||| ||||| || ||     | ||||  ||  | || || || ||   | | |      |||   | ||  | |  || ||  |||   ||  ||   |  |||| | | || |       
GAACGCTCAGTATCGACAATACTGTACCTCGTCTCCCTTCAAGATCTGACACACTGCCCCTTTCGTGTGGTGGATGAGATCAATCAGGgtaa-ttttctctcagcagactctgctcact-tgggtttattcgaagaatatgttaatgcaattattggtacaagtgatatgaaaa-atttgttgtgcacgca-------

upper sequence: LOC_Os05g51790.2 (Oryza sativa), 5'ss of exon 26
lower sequence: EFJ24458 (Selaginella moellendorffii), 5'ss of exon 25
GAGCGATCAGTTTCAACCATCCTGTACCTTGTATCACTTCAAGATCTTACCAACTGCCCCTTTCGGGTCGTTGATGAGATAAATCAAGgcaagccaaccctcacaagtttttgttccctatgcactcaatgctgttataaaatgattactagtttgttgaagcattacaaaggtaactgtttccccgaaattgcag
|| || || || ||||| || || |||||||| ||||| ||||| |||||| |||| || ||||| || || ||||||||||| ||||| |  |  ||      |  ||| || |  | |  |  | |  | | | || |                                                        
GAACGCTCGGTGTCAACTATACTCTACCTTGTCTCACTCCAAGACCTTACCCACTGTCCGTTTCGTGTTGTGGATGAGATAAACCAAGgtatcctgactg----agatttctggttgcgaatctttaacaggtttgatcag-------------------------------------------------------

upper sequence: LOC_Os05g51790.2 (Oryza sativa), 5'ss of exon 26
lower sequence: EFJ13183 (Selaginella moellendorffii), 5'ss of exon 24
GAGCGATCAGTTTCAACCATCCTGTACCTTGTATCACTTCAAGATCTTACCAACTGCCCCTTTCGGGTCGTTGATGAGATAAATCAAGgcaagccaaccctcacaagtttttgttccctatgcactcaatgctgttataaaatgattactagtttgttgaagcattacaaaggtaactgtttccccgaaattgcag
|| || || || ||||| || || |||||||| ||||| ||||| |||||| |||| || ||||| || || ||||||||||| ||||| |  |   |      |  ||| || |  | |  |  | |  | | | || |                                                        
GAACGCTCGGTGTCAACTATTCTCTACCTTGTCTCACTCCAAGACCTTACCCACTGTCCGTTTCGTGTTGTGGATGAGATAAACCAAGgtatcctggctg----agctttctggttgcgaatctttaacaggtttgatcag-------------------------------------------------------