1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
TTTGGAGTTCGACTCTCCTGAGAATCTTTTGAGCAATGAGCACAGTGCTTTCTCCAAGATGGTTCAGAGTACAGGACCTAGCAATGCAGAGTACCTGAAGgtgtttttctatcatctcgatgttcttgaaatttgtgtactacagcataaaacagcgtttgataaataataatgagtgatgctgttcaatccatgttacactccatcgctcaagttttcacagttggctttcagcgaaattattgatatgtgttctgattcaacttttttttgactgaattattgacag
species | Oryza sativa |
transcript | LOC_Os04g52900.2 |
intron # | 26 |
splice site | 5' |
intron type | U2 |
EST: TCTCCAAGATGGTTCAGAGTACAGGACNTAGCAATGCAGAGTACCTGAAG ACTCTTGTATTTGGGGATGGTGAGGAGAGGTTGCGAAAGGAAGAAAGCAAGEST: gi|33685919|gb|CF314158.1|CF314158
genomic: TCTCCAAGATGGTTCAGAGTACAGGACCTAGCAATGCAGAGTACCTGAAGgtgtttttct ... ttattgacagACTCTTGTATTTGGGGATGGTGAGGAGAGGTTGCGAAAGGAAGAAAGCAAG
EST: TCTCCAAGATGGTTCAGAGTACAGGACCTAGCAATGCAGAGTACCTGAAG ACTCTTGTATTTGGGGATGGTGAGGAGAGGTTGCGAAAGGAAGAAAGCAAGEST: gi|112787004|gb|EE591866.1|EE591866
genomic: TCTCCAAGATGGTTCAGAGTACAGGACCTAGCAATGCAGAGTACCTGAAGgtgtttttct ... ttattgacagACTCTTGTATTTGGGGATGGTGAGGAGAGGTTGCGAAAGGAAGAAAGCAAG
EST: TCTCCAAGATGGTTCAGAGTACAGGACCTAGCAATGCAGAGTACCTGAAG ACTCTTGTATTTGGGGATGGTGAGGAGAGGTTGCGAAAGGAAGAAAGCAAGEST: gi|88354423|gb|CI624813.1|CI624813
genomic: TCTCCAAGATGGTTCAGAGTACAGGACCTAGCAATGCAGAGTACCTGAAGgtgtttttct ... ttattgacagACTCTTGTATTTGGGGATGGTGAGGAGAGGTTGCGAAAGGAAGAAAGCAAG
EST: TCTCCAAGATGGTTCAGAGTACAGGACCTAGCAATGCAGAGTACCTGAAG ACTCTTGTATTTGGGGATGGTGAGGAGAGGTTGCGAAAGGAAGAAAGCAAGEST: gi|29671481|gb|CB667756.1|CB667756
genomic: TCTCCAAGATGGTTCAGAGTACAGGACCTAGCAATGCAGAGTACCTGAAGgtgtttttct ... ttattgacagACTCTTGTATTTGGGGATGGTGAGGAGAGGTTGCGAAAGGAAGAAAGCAAG
EST: AAGATGGTTCAGAGTACAGGACNTAGCAATGCAGAGTACCTGAAG ACTCTTGTATTTGGGGATGGTGAGGAGAGGTTGCGAAAGGAAGAAAGCAAGEST: gi|38481628|gb|CF965717.1|CF965717
genomic: AAGATGGTTCAGAGTACAGGACCTAGCAATGCAGAGTACCTGAAGgtgtttttct ... ttattgacagACTCTTGTATTTGGGGATGGTGAGGAGAGGTTGCGAAAGGAAGAAAGCAAG
EST: TCTCCAAGATGGTTCAGAGTACAGGACCTAGCAATGCAGAGTACCTGAAG ACTCTTGTATTTGGGGATGGTGAGGAGAGGTTGCGAAAGGAAGAAAGCAAGEST: gi|38477879|gb|CF962012.1|CF962012
genomic: TCTCCAAGATGGTTCAGAGTACAGGACCTAGCAATGCAGAGTACCTGAAGgtgtttttct ... ttattgacagACTCTTGTATTTGGGGATGGTGAGGAGAGGTTGCGAAAGGAAGAAAGCAAG
EST: TCTCCAAGATGGTTCAGAGTACAGGACCTAGCAATGCAGAGTACCTGAAG ACTCTTGTATTTGGGGATGGTGAGGAGAGGTTGCGAAAGGAAGAAAGCAAG
genomic: TCTCCAAGATGGTTCAGAGTACAGGACCTAGCAATGCAGAGTACCTGAAGgtgtttttct ... ttattgacagACTCTTGTATTTGGGGATGGTGAGGAGAGGTTGCGAAAGGAAGAAAGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGAGTTCGACTCTCCTGAGAATCTTTTGAGCAATGAGCACAGTGCTTTCTCCAAGATGGTTCAGAGTACAGGACCTAGCAATGCAGAGTACCTGAAGgtgtttttctatcatctcgatgttcttgaaatttgtgtactacagcataaaacagcgtttgataaataataatgagtgatgctgttcaatccatgttacactccatcgctcaagttttcacagttggctttcagcgaaattattgatatgtgttctgattcaacttttttttgactgaattattgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG