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GTTGAGTTATCTTATAGTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAGgtatttcaacagttcttctgtaattcttaaaggcttattcttagggtagagaccattacacacaaaaaaaaaatactgcaaagctcgtttctgaaactgg...
species | Oryza sativa |
transcript | LOC_Os01g56490.1 |
intron # | 26 |
splice site | 5' |
intron type | U2 |
EST: GTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAG GTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTAEST: gi|38483147|gb|CF966949.1|CF966949
genomic: GTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAGgtatttcaac ... aatttttcagGTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTA
EST: GTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAG GTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTAEST: gi|58652982|gb|CK041662.1|CK041662
genomic: GTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAGgtatttcaac ... aatttttcagGTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTA
EST: GTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAG GTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTAEST: gi|218495798|gb|FG954256.1|FG954256
genomic: GTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAGgtatttcaac ... aatttttcagGTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTA
EST: CAAAAACAAGATACGCAAG GTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTAEST: gi|33810373|gb|CF331077.1|CF331077
genomic: CAAAAACAAGATACGCAAGgtatttcaac ... aatttttcagGTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTA
EST: GTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAG GTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTAEST: gi|2311230|gb|C27385.1|C27385
genomic: GTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAGgtatttcaac ... aatttttcagGTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTA
EST: GTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAG GTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTA
genomic: GTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAGgtatttcaac ... aatttttcagGTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAGTTATCTTATAGTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAGgtatttcaacagttcttctgtaattcttaaaggcttattcttagggtagagaccattacacacaaaaaaaaaatactgcaaagctcgtttctgaaactgg
- - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa