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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCACCCCAGCTTGAAATAGCTTTGAATAAGTACCCCAATCTACGAACTCCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAGgtactttcccaatattattattagtcttgacagcttgctcctttttcgttttacatttttgattttatgggcagtaaatacttaagcatatagttaccac...

Basic information

species Oryza sativa
transcript LOC_Os01g49940.2
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g49940.1 (Oryza sativa), 5'ss of exon 26
lower sequence: GRMZM2G466139_T01 (Zea mays), 5'ss of exon 23
CTCCACCCCAGCTTGAAATAGCTTTGAATAAGTACCCCAATCTACGAACTCCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAGgtactttcccaatattattattagtcttgacagcttgctcctttttcgttttacatttttgattttatgggcagtaaatacttaagcatatagttaccac-------
||||||| || |||||| |    |||||||| || |||||||| || || ||||||| ||||||||||||||||||||| ||||| | || ||||||||||||| ||  |||||||  | ||||| ||   ||||| |||  ||||| |   ||||  ||   || ||||   | | ||| |  ||| | ||||||           
CTCCACCACAACTTGAATTTATGTTGAATAAATATCCCAATCTTCGGACACCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAGgtacctttacaatatttattttagtgttacaagcttactcaattttcat---acatcctt---ttgatggattg-agatattccagcctctagttaaggtgctataa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29644685|gb|CB649692.1|CB649692
EST:     CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAG                         ACAGATTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAAT
genomic: CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAGgtactttccc ... atgcagacagA----TTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAAT
EST: gi|29622215|gb|CB627226.1|CB627226
EST:     TCTTTGTTCCTTTG-TAATCAGCGGAACATGCACAGCATCTTGCCCAGACAG                      
genomic: TCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTG-CC---CAGgtactttccc ... atgcaga
EST: gi|27577961|gb|CB000656.1|CB000656
EST:     CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAG                         ACAGATTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAAT
genomic: CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAGgtactttccc ... atgcagacagA----TTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAAT
EST: gi|87004655|gb|CI300977.1|CI300977
EST:     CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAG                         ACAGATTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCA
genomic: CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAGgtactttccc ... atgcagacagA----TTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCA
EST: gi|163925961|gb|EG714989.1|EG714989
EST:     CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAG                         ATTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACC
genomic: CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAGgtactttccc ... atgcagacagATTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACC
EST: gi|300215772|gb|HO088398.1|HO088398
EST:     CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAG                         ACAGATTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAAT
genomic: CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAGgtactttccc ... atgcagacagA----TTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAAT