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GATTCTTAGCGTAATACTGGCCAAAGAAGATTTGGCTGATGATGTAGATCTGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAGgtatttttgctttatgtgaagactctttattcttatttgatttcattttgttgaaataaaacaatgattttattttccttttgttcatgatggcaactacttttcag
species | Oryza sativa |
transcript | LOC_Os07g47530.1 |
intron # | 25 |
splice site | 5' |
intron type | U2 |
EST: GTGATATGAAG AATCTGTGCGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAEST: gi|66914068|gb|CX100916.1|CX100916
genomic: GTGATATGAAGgtatttttgc ... tacttttcagAATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGA
EST: TGGAAGCTCTGGCTAACTTGACTGATGGTTACTCAGGCAGTGATATGAAG AATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAEST: gi|29669557|gb|CB665832.1|CB665832
genomic: TGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAGgtatttttgc ... tacttttcagAATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGA
EST: TGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAG AATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAEST: gi|29632466|gb|CB637475.1|CB637475
genomic: TGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAGgtatttttgc ... tacttttcagAATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGA
EST: TGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAG AATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAEST: gi|428039|gb|D24187.1|D24187
genomic: TGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAGgtatttttgc ... tacttttcagAATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGA
EST: TGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAG AATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAEST: gi|58688870|gb|CK077557.1|CK077557
genomic: TGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAGgtatttttgc ... tacttttcagAATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGA
EST: TGGAAGCTCTGGCTAACTTGACCGATGGTTACTCAGGCAGTGATATGAAG AATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAEST: gi|29685522|gb|CB681797.1|CB681797
genomic: TGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAGgtatttttgc ... tacttttcagAATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGA
EST: TGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAG AATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAEST: gi|325493960|gb|JG458484.1|JG458484
genomic: TGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAGgtatttttgc ... tacttttcagAATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGA
EST: TGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGCGATATGAAG AATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCEST: gi|29632742|gb|CB637751.1|CB637751
genomic: TGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAGgtatttttgc ... tacttttcagAATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATC
EST: GCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAG AATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGAEST: gi|29669556|gb|CB665831.1|CB665831
genomic: GCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAGgtatttttgc ... tacttttcagAATCTGTGTGTAACTGCTGCACATTGCCCCATAAGGGAGATCCTTGAAAGA
EST: TGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAG AATCTGTGTGTAACTGCTGCACATTGCCCCA
genomic: TGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAGgtatttttgc ... tacttttcagAATCTGTGTGTAACTGCTGCACATTGCCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTCTTAGCGTAATACTGGCCAAAGAAGATTTGGCTGATGATGTAGATCTGGAAGCTCTGGCTAACTTGACTGATGGTTATTCAGGCAGTGATATGAAGgtatttttgctttatgtgaagactctttattcttatttgatttcattttgttgaaataaaacaatgattttattttccttttgttcatgatggcaactacttttcag
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