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21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' |
TTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTACAAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAGgttattttcttgataccttctttttgtggtggaaaaacttaacaataggttgtttttgctttttaatcttaaaacatgttttaccag
species | Oryza sativa |
transcript | LOC_Os07g06950.1 |
intron # | 25 |
splice site | 5' |
intron type | U2 |
EST: AAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAG GTGTCAGTTCACAGGATTAGGTTGCCAAAGAACAGCACTGTCGGTGATGTGEST: gi|58694390|gb|CK083077.1|CK083077
genomic: AAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAGgttattttct ... gttttaccagGTGTCAGTTCACAGTATTAGGTTGCCAAAGAACAGCACTGTCGGTGATGTG
EST: AAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAG GTGTCAGTTCACAGTATTAGGTTGCCAAAGAACAGCACTGTCGGTGATGTGEST: gi|58659867|gb|CK048547.1|CK048547
genomic: AAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAGgttattttct ... gttttaccagGTGTCAGTTCACAGTATTAGGTTGCCAAAGAACAGCACTGTCGGTGATGTG
EST: AAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAG GTGTCAGTTCACAGTATTAGGTTGCCAAAGAACAGCACTGTCGGTGATGTGEST: gi|58654004|gb|CK042684.1|CK042684
genomic: AAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAGgttattttct ... gttttaccagGTGTCAGTTCACAGTATTAGGTTGCCAAAGAACAGCACTGTCGGTGATGTG
EST: AAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAG GTGTCAGTTCACAGTATTAGGTTGCCCAAGAACAGCACTGTCGGTGATGTGEST: gi|88410434|gb|CI686365.1|CI686365
genomic: AAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAGgttattttct ... gttttaccagGTGTCAGTTCACAGTATTAGGTTGCCAAAGAACAGCACTGTCGGTGATGTG
EST: AAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAG GTGTCAGTTCACAGTATTAGGTTGCCAAAGAACAGCACTGTCGGTGATGTGEST: gi|58668010|gb|CK056696.1|CK056696
genomic: AAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAGgttattttct ... gttttaccagGTGTCAGTTCACAGTATTAGGTTGCCAAAGAACAGCACTGTCGGTGATGTG
EST: AAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAG GTGTCAGTTCACAGTATTAGGTTGCCAAAGAACAGCACTGTCGGTGATGTGEST: gi|163920232|gb|EG710577.1|EG710577
genomic: AAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAGgttattttct ... gttttaccagGTGTCAGTTCACAGTATTAGGTTGCCAAAGAACAGCACTGTCGGTGATGTG
EST: AAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAG GTGTCAGTTCACAGTATTAGGTTGCCAAAGAACAGCACTGTCGGTGATGTG
genomic: AAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAGgttattttct ... gttttaccagGTGTCAGTTCACAGTATTAGGTTGCCAAAGAACAGCACTGTCGGTGATGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTACAAGCTCTGAAGACATTAAAAGTTACATATCATCATGGCACAAAAGATGAGgttattttcttgataccttctttttgtggtggaaaaacttaacaataggttgtttttgctttttaatcttaaaacatgttttaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG