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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCACAAGTGTCGATGTTGAGGAGCATTTGTACAAGATAGCAACTAGTATGGGCATAACTGTCATCACCTCGTCACAAgtaagtatcatctagatacccacttatcctaactcttcaaatggtgaataaaaaaaaaacatggttttcatttctatccattttgtttctagttgatggtattttgcatcttaagcttacatctttgtcagaagtgaaatttgggttgatgatgcctttctctcatttattcatttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g73530.2
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g73530.2 (Oryza sativa), 5'ss of exon 25
lower sequence: GRMZM2G074241_T01 (Zea mays), 5'ss of exon 8
TGCCACAAGTGTCGATGTTGAGGAGCATTTGTACAAGATAGCAACTAGTATGGGCATAACTGTCATCACCTCGTCACAAgtaagtatcatctagatacccacttatcctaactcttcaaatggtgaataaaaaaaaaacatggttttcatttctatccattttgtttctagttgatggtattttgcatcttaagcttacatctttgtcagaagtgaaatttgggttgatgatgcctttctctcatttattcatttgcag
||||||||| || || |||||||||||| |||||| | ||||||| |  ||||||||||| |||||||| || ||||||||||||||   |  ||||| |  || |  |  |||  | |    ||  |         || |  | ||   |||  | ||                                                                                                    
TGCCACAAGCGTGGACGTTGAGGAGCATCTGTACAGGCTAGCAACCAACATGGGCATAACAGTCATCACATCCTCACAAgtaagtatg--catgatactc--ttgttgtttctcgccta----tgcctctcctgctcacttcttgtttgcttcattgcag---------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33684551|gb|CF312790.1|CF312790
EST:     TGTACAAGATAGCAACTAGTATGGGCATAACTGTCATCACCTCGTCACAA                         AGGCCTGCTCTGATACCCTTCCATTCGTTGGAGCTGAAACTCATCGATGGT
genomic: TGTACAAGATAGCAACTAGTATGGGCATAACTGTCATCACCTCGTCACAAgtaagtatca ... tcatttgcagAGGCCTGCTCTGATACCCTTCCATTCGTTGGAGCTGAAACTCATCGATGGT
EST: gi|29645989|gb|CB650996.1|CB650996
EST:     TGTACAAGATAGCAACTAGTATGGGCATAACTGTCATCACCTCGTCACAA                         AGGCCTGCTCTGATACCCTTCCATTCGTTGGAGCTGAAACTCATCGATGGT
genomic: TGTACAAGATAGCAACTAGTATGGGCATAACTGTCATCACCTCGTCACAAgtaagtatca ... tcatttgcagAGGCCTGCTCTGATACCCTTCCATTCGTTGGAGCTGAAACTCATCGATGGT