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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagctataaccttgtgttggggttgggataatgaaaaattgctgtttgttgatttctaaccatttggtcgttaattactactgtag

Basic information

species Oryza sativa
transcript LOC_Os11g43970.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
lower sequence: GRMZM2G052403_T01 (Zea mays), 5'ss of exon 15
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagctataaccttgtgttggggt-tgggataatgaaaaattgctgtttgttgatttctaaccatttggtcgttaattactactgtag----------------
||||| | |||||||||||||| || ||||| || ||||||||||| |||||||| ||||| |||||||| |||||||| |||||||||||||| |||||||||    |||||  || |     ||| |||||| |       | | | | |||| |    |  ||  | | ||  |||||  | |||| |                
ATGGACTGCGCACTAAAGATAAGGAGCGTGTGCTTGTTCTTGGTGCTACAAATAGACCTTTTGACCTGGACGAGGCTGTGATTAGGAGGTTCCCCCGCAGgtgaa---tataattttattcaatggtgtgggatgacccggt-tgggtatctgttcag---tggcccatggttctctaattgttgctgttgggtagcaatagttttg

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
lower sequence: GRMZM2G435582_T01 (Zea mays), 5'ss of exon 4
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagctataaccttgtgttggggttgggataatgaa--aaattgctgtt-tgttgatttctaaccatttggtcgttaattactactgtag---------------------------------------------------------------------------------------
|||| || | |||||||||||| ||  ||||  | ||||||||||  |||||||| ||||| |||||||| |||||||| |||||||||||||| || |||| |  | | |  | ||    ||||  |||  ||   |     ||  ||||  | ||| | | |   |  | | |   |||||  | || | |                                                                                       
ATGGGTTGCACACTAAAGATAAGGAGTGTGTGGTTGTTCTTGGTGTTACAAATAGACCTTTTGACCTGGACGAGGCTGTGATTAGGAGGTTCCCCCGTAGgtaaatgttgtttcatt-cagtgggactggattacccagttgcataactgtagttttgttctgtgggccatggttatctaattgttgcttttgggtagcaatagtttcgtttggttgggtgggactatcaaatcgctgctgctggttccatattcatcaccatcttactcattgtttcag

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
lower sequence: GRMZM2G354532_T01 (Zea mays), 5'ss of exon 3
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagctataaccttgtgttggggttgggataatgaa--aaattgctgtt-tgttgatttctaaccatttggtcgttaattactactgtag---------------------------------------------------------------------------------------
|||| || |||||||||||||| || ||||| || ||||||||||| |||||||| ||||| |||||||| |||||||| |||||||||||||| ||||||| |  | | |  | ||    ||||  |||  ||   |     ||  ||||  | ||| | | |   |  | | |   ||||   | || | |                                                                                       
ATGGGTTGCGCACTAAAGATAAGGAGCGTGTGCTTGTTCTTGGTGCTACAAATAGACCTTTTGACCTGGACGAGGCTGTGATTAGGAGGTTCCCCCGCAGgtaaatgttgtttcatt-cagtgggactggattacccagttgcataactgtagttttgttctgtgggccatggttatctaatcgttgcttttgggtagcaatagttttgtttggttgggtgggactatcaaatcgctgctgctggttccatattcatcaccatcttactcattgtttcag

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
lower sequence: GRMZM2G126453_T02 (Zea mays), 5'ss of exon 9
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagctataaccttgtgttggggttgggataa-----tgaaaaattgc-----tgtttgttgatttctaaccatttggtcgttaattactact-gtag-------------------------------------------
|||| || |||||||||||||| || ||||| || ||||||||||| |||||||||||||| ||||| || |||||||| |||||||||||||| ||||||| |  | | |  | ||    ||||  |||  ||      || | || ||      |||| | ||     | |  || |  |||||  ||     | | |                                            
ATGGGTTGCGCACTAAAGATAAGGAGCGTGTGCTTGTTCTTGGTGCTACAAATAGGCCTTTTGACCTCGACGAGGCTGTGATTAGGAGGTTCCCCCGCAGgtaaatgttgtttcatt-cagtgggactggattacccagttgtataactgtagttttgttcggtgggccatgattatctaatcgttgcttttgggtagcaatagtttggttccatattcatcaccatcttactcattgtttcag

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
lower sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 7
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagctataaccttgtgttggggttgggataatgaaaaattgctgtttgttgatttctaaccatttggtcgttaattactactgtag-----------------------------------------------------
|||| |||||||| || ||||  || || || || || ||||  ||||| ||||||||||| ||||| ||||||||||||||| ||||| | || || ||||||   | ||    ||    ||   ||    |  |      ||||| ||| |||       |       |  |    |   ||  ||                                                       
ATGGCTTACGCACAAAGGATACTGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATTCGGAGGCTGCCTCGGAGgtgaactccatg---ttcaactgctcttcaattccttcttttttgctcttttttgggaagggaggggggtggtgggggtgggtagggtgttaatggaactaataaatgttcgaagttttcttaatcttattggtcttctgcag

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
lower sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 23
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagctataaccttg-tgttg----gggttgggataatgaaaaattgctgtttgttgatttctaaccatttggtcgttaattactactgtag
||||  | || || ||||||||||| |||||||| ||||||| ||| ||||| |||||||| || || ||||||||||| ||||||||| | || ||  |||||      ||   ||  ||||     |  ||   ||  |  | |  ||   | | ||  |     |   | ||        ||  |  |||||
ATGGTCTGCGTACAAAAGATAAAGAGCGTGTACTTGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGgtgagcatgttatgtttaatgttaacttgtattttcatgttttacagatgacatctattc-taatgcatggtctgacttcattttttttttgtag

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
lower sequence: GLYMA02G17400.1 (Glycine max), 5'ss of exon 20
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagctataaccttgtgttggggttgggataatgaaaaattgctgtttg---ttgatttctaaccat-ttggtcgttaattactactgtag
|||| ||  | || ||||||||||| ||| |||| ||||||| ||| |||||||| ||||| || || ||||||||||| ||||||||  | || || |||| |   |  ||   |||   |    ||    || |      ||      ||   |  ||    |  | | ||  | ||| |  | || |||||
ATGGTTTGAGAACAAAAGATAAAGAGCGTATACTTGTTCTTGCTGCTACAAATAGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGACTTCCACGAAGgtaaactcgttatgtttgatgttaacttcttttatttcgtgttttacaaatgagatctatgctaattcgtgttctttgttgaaaaatattgtag

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
lower sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 19
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagctataaccttgtgttggggttgggataatgaaaaattgctgtt--tgttgatttctaaccat--ttggtcgttaattactact-gtag
||||  | || || ||||||||||| |||||||| ||||||| ||| ||||| |||||||| || || ||||||||||| ||||||||| | || ||  |||||    | | |  ||   |      | | ||  | |    || | | |    |  |||   |  |||  |  ||| | ||||  |  | ||||
ATGGTCTGCGTACAAAAGATAAAGAGCGTGTACTTGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGgtga-gcatgttatgtttaatgttaacttgtattttcatgttttacagatgacatctattctaatgcatggtctgtcttcaatttttttttgtag

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
lower sequence: GLYMA10G02410.1 (Glycine max), 5'ss of exon 20
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagctataaccttgtgttggggttgggataatgaaaaattgctgtttgttgatttctaaccatttgg-----tcgttaattactactgtag
|||| || || || ||||||||||| ||| |||| |||||||  || |||||||| ||||| || || ||||||||||| ||||||||  | || || |||| |   |  ||   |||   |  | ||    || |      ||      ||  ||| | |    |||||      |  || |  |  | |||||
ATGGTTTGCGAACAAAAGATAAAGAGCGTATACTTGTTCTTGCGGCTACAAATAGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGACTTCCACGAAGgtaaactcattatgtttgatgtcagcttcttttatttcgtgtttcacaaatga-gatctatgctaatttgtgttctttcttgaaaaaaattgtag

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
lower sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 24
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtga----------cagctataa-------ccttgtgtt----------------ggggttgggataatgaaaaattgctgtttgttgattt--ctaacc-atttggtcgttaattactactgtag-----------
|||| |||||||| || ||||  || || || || || ||||  ||||| ||||||||||| ||||| ||||||||||||||  ||||| | || || ||||||          || ||  |        |||| | ||                |||  |||| |  ||  |    |  |  |||| ||    ||||    ||||    ||  ||| |  | | |           
ATGGCTTACGCACAAAGGATACCGAGCGAGTTCTTGTACTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGgtgaactccatgttcaactgcacttcaattccttttttttgctcttttttgggaagggagtggggtggtgggagtgggtaggatgttaatggaactaatttgtttgaagttttcttaatcatattggtcttctgcag

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
lower sequence: AT4G24860.1 (Arabidopsis thaliana), 5'ss of exon 23
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagctataaccttgtgttggggttgggataat--gaaaaattgctgtt----tgttgatttctaaccatttggtcgttaattactactgtag
| ||  |    ||| | || |  |||||||| ||||| ||||  ||||||||| ||||||| ||||| ||||||||||| |||||  |||| || || |||| |    || | |  |   ||||  |  |  |  |  |  ||||||   |     |  |   || | |  |||| || || | | ||| ||| ||
ACGGTCTTACGACTCAGGAAAGGGAACGTGTTCTGGTCCTTGCAGCCACAAATCGGCCTTTTGACCTTGATGAGGCTGTTATTAGACGGTTGCCCCGTAGgtaaattataaatcgcttccttggactaagctttttttgttaaattgacatgacagttataggttgtgaaaattttgtggt-attgacttctgcag

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
lower sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgac--agctataaccttgt-gttggggttgggataatgaaaaattgctgtttgttgatttctaaccatttggtcgttaattactactgtag
| ||  |  | || || || || |||||||| ||||||||||  ||||||||||| ||||| ||||| || |||||||||||||| ||||| || |  |||| |   |  |||| | |  | |||||  |  |  |  ||  ||||||   | |  | |     ||   ||||||  ||   | || | |   
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaatttatatatagcttccttgttggactaagctttctgtcaaattgacatgtcgtaa----caagtttttggt-attggcttctgcag---

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 23
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtga--------cagctataa--ccttgtgttg--gggttgggataatgaaaaatt--gctgtttgttgatttctaaccatttggtcgttaattactactgtag
||||  |||| || || ||||||||||||||| |||| ||||  ||||| ||||||||||| ||||| ||||||||||| ||||||||| | ||  | |||| |            |||||  |||||  |||  | ||  |  || |    ||    |       || ||| |  || || |    ||||| | | |      
ATGGCCTACGTACAAAGGATAAAGAACGTGTATTGGTACTTGCCGCCACCAATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAGgtaaacatcatatgattataatcccttgatttgttgtgtatgagtattagtcaacccagaaaaaccttaattccctactatgta--tgttaactgccaacac--

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
lower sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 24
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagctataaccttgtgttggggttgggataatgaaaa--attgctgtttgttgatttctaaccatttggtcgttaatta-ctactgtag
|||| || ||||| |||||||  ||| | || ||||| ||||  ||||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| |||| |  |  || ||   |   |   |||||  ||    |    ||| |       ||     ||    ||  ||  |   | | ||  |  ||
ATGGCTTGCGCACAAAAGATACCGAAAGGGTTCTGGTGCTTGCAGCCACAAATAGACCTTTTGACCTTGATGAGGCTGTTATTAGAAGGTTGCCGCGTAGgtaa--ggcatcactgagccattttgttggactatcctactttatttccacaaactgggacttagttcttctgtaatggttcatcttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55409323|gb|CV721699.1|CV721699
EST:     AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAG                         GTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
genomic: AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagcta ... actactgtagGTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
EST: gi|58691499|gb|CK080186.1|CK080186
EST:     AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAG                         GTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
genomic: AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagcta ... actactgtagGTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
EST: gi|8860068|gb|AU097386.1|AU097386
EST:     AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGA-GTTCCCGCGCAG                         GTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
genomic: AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagcta ... actactgtagGTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
EST: gi|58607816|gb|CK035849.1|CK035849
EST:     AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAG                         GTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
genomic: AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagcta ... actactgtagGTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
EST: gi|218497816|gb|FG965087.1|FG965087
EST:     AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAG                         GTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
genomic: AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagcta ... actactgtagGTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
EST: gi|11171080|gb|AU163614.1|AU163614
EST:     AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGA-GTTCCCGCGCAG                         GTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
genomic: AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagcta ... actactgtagGTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
EST: gi|29682150|gb|CB678425.1|CB678425
EST:     AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAG                         GTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
genomic: AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagcta ... actactgtagGTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
EST: gi|66922707|gb|CX109555.1|CX109555
EST:     AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAG                         GTTAATGGTTAACTTACCCTTGGAACGCATCGAATAGAGAAAAGATTCCTG
genomic: AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagcta ... actactgtagGTTAATGGTTAACTTACC-T-G-A-CGCATCGAATAGAGAAAAGATTC-TG
EST: gi|15857794|gb|BI810606.1|BI810606
EST:     TCATTAGGA-GTTCCCGCCCAG                         GTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
genomic: TCATTAGGAGGTTCCCGCGCAGgtgacagcta ... actactgtagGTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
EST: gi|8860101|gb|AU097419.1|AU097419
EST:     AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGA-GTTCCCGCGCAG                         GTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
genomic: AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagcta ... actactgtagGTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
EST: gi|27554453|gb|CA998353.1|CA998353
EST:     AATAGGCCTTTCGACCTGGATGAGGCTGTCATTACGAGGTTCCCGCGCAG                         GTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
genomic: AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagcta ... actactgtagGTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
EST: gi|58686681|gb|CK075368.1|CK075368
EST:     AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAG                         GTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
genomic: AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagcta ... actactgtagGTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
EST: gi|86831749|gb|CI301599.1|CI301599
EST:     AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAG                         GTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT
genomic: AATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagcta ... actactgtagGTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 71 (downstream exon)
Score: 60

ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagcta ... actactgtagGTTAATGGTTAACTTACCTGACGCATCGAATAGAGAAAAGATTCTGAAAGTAATATTGGCAAAGGAAGAGTTGGCTCCAGGTATTGATATGGATTCTCTT




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