1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
GGCTAACAGTGCTAAAACATGGAAGGAAGTCTGCTTTGCTTGTGTTGATGCCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAGgtatatatacaggagcaacctgttagaactaaaacatatttcagtacaagtcttttcttatctagattttttctaacacccttttttgtatag
species | Oryza sativa |
transcript | LOC_Os11g01380.1 |
intron # | 24 |
splice site | 5' |
intron type | U2 |
EST: CCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAG GTTGATGATTTGGAGGAAGTAAGTGAATACTACCAGAACAGAGGATGTTTCEST: gi|218479721|gb|FG960857.1|FG960857
genomic: CCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAGgtatatatac ... ttttgtatagGTTGATGATTTGGAGGAAGTAAGTGAATACTACCAGAACAGAGGATGTTTC
EST: CCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAG GTTGATGATTTGGAGGAAGTCAGTGAATACTACCAGAACAGAGGATGTTTCEST: gi|88574701|gb|CI666470.1|CI666470
genomic: CCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAGgtatatatac ... ttttgtatagGTTGATGATTTGGAGGAAGTAAGTGAATACTACCAGAACAGAGGATGTTTC
EST: CCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAG CTTGATGATTTGGAGGAAGTAAGTGAATACTACCAGAACAGAGGATGTTCCEST: gi|29624230|gb|CB629241.1|CB629241
genomic: CCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAGgtatatatac ... ttttgtatagGTTGATGATTTGGAGGAAGTAAGTGAATACTACCAGAACAGAGGATGTTTC
EST: CCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAG GTTGATGATTTGGAGGAAGTAAGTGAATACTACCAGAACAGAGGATGTTTCEST: gi|29663093|gb|CB659368.1|CB659368
genomic: CCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAGgtatatatac ... ttttgtatagGTTGATGATTTGGAGGAAGTAAGTGAATACTACCAGAACAGAGGATGTTTC
EST: CCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAG GTTGATGATTTGGAGGAAGTAAGTGAATACTACCAGAACAGAGGATGTTTCEST: gi|112785583|gb|EE590994.1|EE590994
genomic: CCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAGgtatatatac ... ttttgtatagGTTGATGATTTGGAGGAAGTAAGTGAATACTACCAGAACAGAGGATGTTTC
EST: CCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAG GTTGATGATTTGGAGGAAGTAAGTGAATACTACCAGAACAGAGGATGTTTCEST: gi|88333307|gb|CI642344.1|CI642344
genomic: CCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAGgtatatatac ... ttttgtatagGTTGATGATTTGGAGGAAGTAAGTGAATACTACCAGAACAGAGGATGTTTC
EST: CCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAG GTTGATGATTTGGAGGAAGTAAGTGAATACTACCAGAACAGAGGATGTTTC
genomic: CCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAGgtatatatac ... ttttgtatagGTTGATGATTTGGAGGAAGTAAGTGAATACTACCAGAACAGAGGATGTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTAACAGTGCTAAAACATGGAAGGAAGTCTGCTTTGCTTGTGTTGATGCCGAGGAGTTCCGGCTAGCACAAATATGTGGTCTCAATATTATTGTCCAGgtatatatacaggagcaacctgttagaactaaaacatatttcagtacaagtcttttcttatctagattttttctaacacccttttttgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG