1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
TCGGTCAGGCGGGTCGACCCAAGACAATTACTGGATTCCAGACGCATTCAACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaaacatctggagaacaattttcaaatttgtcagttgatctttgcttatgcttatgttctttctatatgcag
species | Oryza sativa |
transcript | LOC_Os09g15750.1 |
intron # | 24 |
splice site | 5' |
intron type | U2 |
EST: GAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|88901735|gb|CI001843.1|CI001843
genomic: GAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|88470132|gb|CI407403.1|CI407403
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: TGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|8857666|gb|AU094984.1|AU094984
genomic: TGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|12622674|gb|AU172887.1|AU172887
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|88455294|gb|CI519315.1|CI519315
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: CCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGGAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|86592847|gb|CI270404.1|CI270404
genomic: CCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|86518551|gb|CI158757.1|CI158757
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|14191579|gb|AU183790.1|AU183790
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|86492954|gb|CI135587.1|CI135587
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|88506110|gb|CI433616.1|CI433616
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|8856938|gb|AU094256.1|AU094256
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|86872143|gb|CI333304.1|CI333304
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|55410835|gb|CV723211.1|CV723211
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|89174234|gb|CI042127.1|CI042127
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|58591305|gb|CF989613.1|CF989613
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|86478141|gb|CI120774.1|CI120774
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTCGTGATCCTAAGAAATAAEST: gi|88269184|gb|CI380482.1|CI380482
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTTTATTACTTTCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|88411733|gb|CI521456.1|CI521456
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: GAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|87016283|gb|CI271694.1|CI271694
genomic: GAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|88249096|gb|CI248945.1|CI248945
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|29626609|gb|CB631620.1|CB631620
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|86425366|gb|CI070463.1|CI070463
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|88837459|gb|CI078819.1|CI078819
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|8527826|gb|AU092641.1|AU092641
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCNGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|86430376|gb|CI082799.1|CI082799
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|88260505|gb|CI362798.1|CI362798
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: CGCAGGGGAACGAGCAGAGGCTGGCAACTG-AAA ATATCTTCCACTGACACCAGTTCTTGAGGTTTTTGTGATCCTAAAAAATAAEST: gi|86479306|gb|CI121939.1|CI121939
genomic: CGCAGGGGAACGAGCAGA-GCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|88225411|gb|CI225327.1|CI225327
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|88283498|gb|CI404944.1|CI404944
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|13896674|gb|AU183010.1|AU183010
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAAEST: gi|27920720|gb|CB096528.1|CB096528
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
EST: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAA ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
genomic: ACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaa ... ctatatgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGTCAGGCGGGTCGACCCAAGACAATTACTGGATTCCAGACGCATTCAACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCAACTGAAAAgtaaactaaaacatctggagaacaattttcaaatttgtcagttgatctttgcttatgcttatgttctttctatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT